RetrogeneDB ID: | retro_pvam_942 | ||
Retrocopy location | Organism: | Megabat (Pteropus vampyrus) | |
| Coordinates: | scaffold_1805:106017..106601(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SNX15 | ||
| Ensembl ID: | ENSPVAG00000007902 | ||
| Aliases: | None | ||
| Description: | sorting nexin 15 [Source:HGNC Symbol;Acc:14978] |
Retrocopy-Parental alignment summary:
>retro_pvam_942
CCATCCCCAGATGAGCCCTGGCCACCTCCTGATGAGCTCTGGTTTACCTGCCTCTCCCTGTGGAAAGGAGAGGCCTTCAG
GAGCTGGAGGTGCCATGGACCTCGCCATCCAGCCCTGCCGGGAGGTCCTAGATCTCCTCTGAAACTGTGAGAGCACCAGG
AGGGGTCCTGCCAAAGACCCCTCTCTGAGGCTGAGCTTACCCTCTTCATCCCTTCTCCAAGGAAACAGGTGCAGGCCCAG
TCCCACCCACATAGGCGAGCGGGCCGTGATGCAGGCAGAGTCCTAAAGGCTGGACCAGAAACCTTGGGAGCTGAGAAGGC
AGGAGGAGGTAGAGGTCAAGAGGATGGAGGGCTTGCCCCTGCCTCTCTGAGCTGCGCCAAAGAGCTCATCGCCCAGGCCC
TGAAAGAGGAGGAGGCAGGTGCCTACCCTGTGGCTCTGCAGGGCCGGGGGACTACCACACACCCTGCTTCAGGGGGTCCC
AGTGACACGTCTCCTGCCTTCAGGGAGGTGTGAAGAAGGAGGCAGCTGAGCACTTGAAGTGGGCAGACGCAATCCGGCTC
CTGCCCTTCTCCCGGCCCCCACCC
ORF - retro_pvam_942 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 57.42 % |
| Parental protein coverage: | 58.77 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 7 |
Retrocopy - Parental Gene Alignment:
| Parental | PPPLIPTPPPDESWLP-QPLPVEKRGLEESEVPADPPPSSPA-QEALDLLFNGGSTEEASGSPARGP-LT |
| P.P..P.PPPDE.W....PLPVE.RGL.E.EVP...P.SSPA..E.LDLL.N..ST......PA..P.L. | |
| Retrocopy | PSPDEPWPPPDELWFT<LPLPVERRGLQELEVPWTSP-SSPA<REVLDLL*NCESTRRG---PAKDP<LS |
| Parental | EAELALF-DPFSREEGAG-PSPTHIGELAAMEAESERPDQEPWEPGGQEEEEDK-EGGS-TPAYLSQATE |
| EAEL.LF..PFS.E.GAG.PSPTHIGE.A.M.AES.R.DQ.PWE...QEE.E.K.E.G...PA.LS.A.E | |
| Retrocopy | EAELTLF<HPFSKETGAG<PSPTHIGERAVMQAES*RLDQKPWELRRQEEVEVK<EDGGLAPASLSCAKE |
| Parental | LITQALRDEKAGAYPAALQGYRDGVHILLQGVPGDPSPARQE-GVKKKAAAYLKRAEEILHLHLSQLPP |
| LI.QAL..E.AGAYP.ALQG.....H....G.P.D.SPA..E.GVKK.AA..LK.A..I..L..S..PP | |
| Retrocopy | LIAQALKEEEAGAYPVALQGRGTTTH-PASGGPSDTSPAFRE<GVKKEAAEHLKWADAIRLLPFSRPPP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_942 was not experimentally validated.
Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pteropus vampyrus | ENSPVAG00000007902 | 1 retrocopy |
retro_pvam_942 ,
|
| Tursiops truncatus | ENSTTRG00000000324 | 1 retrocopy |