RetrogeneDB ID:

retro_rnor_148

Retrocopy
location
Organism:Rat (Rattus norvegicus)
Coordinates:3:82685137..82686073(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSRNOG00000049572
Aliases:Olr592, ratchr3-71494822-71495757_ORF
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Olfr1148
Ensembl ID:ENSRNOG00000048052
Aliases:None
Description:olfactory receptor 1148 [Source:MGI Symbol;Acc:MGI:3030982]


Retrocopy-Parental alignment summary:






>retro_rnor_148
ATGAAACATGAAGTTGAAGCAGAAGGCAACATTTCTACAGTAATGCAATTTGTCCTGCTGGGATTCTCTGCTCTTCCCAA
CCTCCAAGGAATTCTGTCTGCACTGTTCTCCCTCATTTACATGATTATCCTCACTGGTAATTGCCTCATCATATTAATAA
CTAGGCTTGACCATACATTGCAAAAACCGATGTATTTTTTCCTGGCAAATTTTTCCTGTCTGGAAATCTGTTATGTATCA
GTTACTGTCCCAAGAATTCTGTTCAACATTTGGACACAGGATAGAAACATTTCAGTGCTGGCTTGTGCTGTGCAGATGTG
TTTCTTTCTTATGTTGGGAACCGATGAATGTTTCCTCCTGGCTGTGATGTCCTATGATCGCTATGTGGCCATTTGCAATC
CCTTGCACTATCCTGTGGTCATGAACTCAAAAAAGTGCACTCAGCTTGCAGCAGGCTCCTGGATCAGTGGCATTCCAATT
CAGATTGGACAAACTTGTTGGATATTCTCTATGCATTTCTGCAATTCTAATGAAATAGACCATTTCTTCTGTGACATACC
ACCAATTCTGAAGCTGGCATGTGGGGACACTTCAGTGCATGAACTGTCTGTCTATGTGGTTGTTATGGTGGTGGCTGCTT
TCCCCTTTATTCTGGTGCTAACATCCTACAGCAAAATCATTGCCACCATCCTGAGGTTGCCAACAGCCAAAGGGCGGGCA
AAAGCCTTCTCCACATGTTCTTCTCACCTGCTGGTGGTGGTTTTGTTTTATGGATCTGGTACCATTACATACTTGAGGCC
AAAGTCTATGCATAATCCTGGAACTGACAAACTGCTCTCTCTGTTCTATACCATTGTGACTCCCATGTTCAATCCTCTAA
TATACACTCTTAGGAACAAGGAAGTTATTGTTGCCCTGAGAAAACTAATAGTCTAA

ORF - retro_rnor_148 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.43 %
Parental protein coverage: 99.03 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalHEEIRTENVSTVTQFVLIGFSELPSLQGFLFAVFSIVYIIILVGNFLIILITSMDPALQKPMYFFLANFS
HE.....N.STV.QFVL.GFS.LP.LQG.L.A.FS..Y.IIL.GN.LIILIT..D..LQKPMYFFLANFS
RetrocopyHEVEAEGNISTVMQFVLLGFSALPNLQGILSALFSLIYMIILTGNCLIILITRLDHTLQKPMYFFLANFS
ParentalSLEICYVSVTVPRILFSLEKQDRSISMMSCATQLCFFLIFGTTECLLLTVMSYDRYVAICNPLHYPLIMN
.LEICYVSVTVPRILF....QDR.IS...CA.Q.CFFL..GT.EC.LL.VMSYDRYVAICNPLHYP..MN
RetrocopyCLEICYVSVTVPRILFNIWTQDRNISVLACAVQMCFFLMLGTDECFLLAVMSYDRYVAICNPLHYPVVMN
ParentalPTKCTQLAAGSWLGGIPVQIGQTCQIFSMKFCNSYKINHFFCDIPPILKLACGDTTMHELSVYVVVMVVA
..KCTQLAAGSW..GIP.QIGQTC.IFSM.FCNS..I.HFFCDIPPILKLACGDT..HELSVYVVVMVVA
RetrocopySKKCTQLAAGSWISGIPIQIGQTCWIFSMHFCNSNEIDHFFCDIPPILKLACGDTSVHELSVYVVVMVVA
ParentalAFPFILVLTSYSKIIATILRLPTAKGRAKAFSTCSSHLLVVVLFYGSATVTYLRPKSMHSPGTDKLLSLF
AFPFILVLTSYSKIIATILRLPTAKGRAKAFSTCSSHLLVVVLFYGS.T.TYLRPKSMH.PGTDKLLSLF
RetrocopyAFPFILVLTSYSKIIATILRLPTAKGRAKAFSTCSSHLLVVVLFYGSGTITYLRPKSMHNPGTDKLLSLF
ParentalYTIVTPMFNPLIYSLRNKEVISALRKL
YTIVTPMFNPLIY.LRNKEVI.ALRKL
RetrocopyYTIVTPMFNPLIYTLRNKEVIVALRKL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 0 .00 RPM
SRP017611_kidney 0 .00 RPM 0 .00 RPM
SRP017611_liver 0 .00 RPM 0 .00 RPM

ChIP-Seq - click to see more details

Rattus norvegicus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_rnor_148 retrocopy.

TSS - click to see more details

Rattus norvegicus was not studied using FANTOM5 data.

Lab - click to see more details

retro_rnor_148 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_rnor_148 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Rattus norvegicus ENSRNOG00000048052 1 retrocopy
retro_rnor_148 ,


Copyright © RetrogeneDB 2014-2017