>retro_rnor_162
ATGGGTTCCTCCAGCTCTACGGCTCTGGCTCGCCTCGGCCTCCCTGGGCAGCCGCGGTCCACCTGGCTCGGCGTCGCCGC
GCTGGGGCTGGCTGCGGTGGCGCTGGGGACCGTAGCTTGGCGTCGCACGCGTCCCCGGCGGCGCCGGCAGCTGCAGCAGG
TGGGCACGGTGTCGAAGGTTTGGATCTACCCGATCAAGTCCTGCAAGGGGGTGTCGGTGTGTGAGACCGAGTGCACGGAC
ATGGGGCTGCGCTGTGGCAAAGTGCGCGACAGGTTCTGGATGGTGGTGAAGGAGGACGGACACATGGTCACTGCCCACCA
GGAGCCTCGCCTTGTGCTGGTCTCCATCACCCTGGAGAACAATTACCTGACGCTGGAAGCTCCAGGCATGGAGCAGATAG
TTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGCTGTTTGGTCTCGACATCAAAGGCAGAGATTGT
GGCGATGAGGTAGCTCAGTGGTTCACCAACTACCTGAAGACGCAAGCCTACAGGTTGGTTCAGTTTGATACCAGCATGAA
AGGAAGAACAACGAAGAAACTTTACCCTTCTGAAAGTTACCTTCAGAACTATGAGGTAGCCTACCCGGACTGCAGCCCTG
TCCACCTGATTTCTGAAGCCTCCTTAGTCGATCTCAACACCAGGCTGAAGAAGAAAGTGAAGATGGAATATTTCAGGCCA
AACATCGTGGTGTCAGGCTGTGAGGCTTTCGAGGAGGATACTTGGGATGAACTCCTGATTGGTGACGTGGAGATGAAAAG
GGTGTTGAGCTGTCCCAGGTGCGTTTTGACTACAGTGGACCCAGACACCGGCATCATAGACAGGAAGGAGCCACTGGAGA
CCCTGAAGAGCTATCGCCTGTGTGATCCTTCTGTGAAGAGTATATACCAGTCATCTCCACTTTTTGGGATGTATTTCTCG
GTGGAGAAGCTTGGGAGCCTGAGAGTGGGTGACCCTGTGTACCGGATGGTGGATTAG
ORF - retro_rnor_162 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
95.56 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MGSSSSTALARLGLPGQPRSTWLGVAALGLAAVALGTVAWRRARPRRRRQLQQVGTVSKVWIYPIKSCKG |
| MGSSSSTALARLGLPGQPRSTWLGVAALGLAAVALGTVAWRR.RPRRRRQLQQVGTVSKVWIYPIKSCKG |
Retrocopy | MGSSSSTALARLGLPGQPRSTWLGVAALGLAAVALGTVAWRRTRPRRRRQLQQVGTVSKVWIYPIKSCKG |
|
Parental | VSVCETECTDMGLRCGKVRDRFWMVVKEDGHMITARQEPRLVLVTITLENNYLMLEAPGMEPIVLPIKLP |
| VSVCETECTDMGLRCGKVRDRFWMVVKEDGHM.TA.QEPRLVLV.ITLENNYL.LEAPGME.IVLPIKLP |
Retrocopy | VSVCETECTDMGLRCGKVRDRFWMVVKEDGHMVTAHQEPRLVLVSITLENNYLTLEAPGMEQIVLPIKLP |
|
Parental | SSNKIQDCRLFGLDIKGRDCGDEVARWFTSYLKTQAYRLVQFDTKMKGRTTKKLYPSESYLQNYEVAYPD |
| SSNKI..CRLFGLDIKGRDCGDEVA.WFT.YLKTQAYRLVQFDT.MKGRTTKKLYPSESYLQNYEVAYPD |
Retrocopy | SSNKIHNCRLFGLDIKGRDCGDEVAQWFTNYLKTQAYRLVQFDTSMKGRTTKKLYPSESYLQNYEVAYPD |
|
Parental | CSPIHLISEASLVDLNTRLQKKVKMEYFRPNIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVD |
| CSP.HLISEASLVDLNTRL.KKVKMEYFRPNIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVD |
Retrocopy | CSPVHLISEASLVDLNTRLKKKVKMEYFRPNIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVD |
|
Parental | PDTGIIDRKEPLETLKSYRLCDPSVKSLYQSSPLFGMYFSVEKIGSLRVGDPVYRMVD |
| PDTGIIDRKEPLETLKSYRLCDPSVKS.YQSSPLFGMYFSVEK.GSLRVGDPVYRMVD |
Retrocopy | PDTGIIDRKEPLETLKSYRLCDPSVKSIYQSSPLFGMYFSVEKLGSLRVGDPVYRMVD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
21 .71 RPM |
SRP017611_kidney |
0 .00 RPM |
75 .36 RPM |
SRP017611_liver |
0 .00 RPM |
110 .13 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_162 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_162 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_162 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.