RetrogeneDB ID: | retro_rnor_2278 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:28503988..28504317(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000040044 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Znhit1 | ||
Ensembl ID: | ENSRNOG00000001418 | ||
Aliases: | None | ||
Description: | zinc finger, HIT domain containing 1 [Source:RefSeq peptide;Acc:NP_001258279] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 73.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLS |
Q.....QLE.LEN.NFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLR..KNFQALLEEQNL. | |
Retrocopy | QAEADQQLEVLEN-NFQDDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLRLPKNFQALLEEQNLN |
Parental | ASEGPNYLTACAGPPSRPQRPFCA-VCGFPSPYTCVSCGARY |
ASEGPNYLT.C..PPSRPQRPFCA..CGFPS.YTCVSCGARY | |
Retrocopy | ASEGPNYLTVCVVPPSRPQRPFCA<WCGFPSTYTCVSCGARY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 15 .60 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .12 RPM |
SRP017611_liver | 0 .07 RPM | 4 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000010174 | 1 retrocopy | |
Homo sapiens | ENSG00000106400 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016713 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006951 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019525 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001418 | 2 retrocopies |
retro_rnor_2162, retro_rnor_2278 ,
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