RetrogeneDB ID: | retro_rnor_49 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | AABR06111258.1:90..693(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSRNOG00000046954 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Fkbp14 | ||
| Ensembl ID: | ENSRNOG00000009886 | ||
| Aliases: | None | ||
| Description: | peptidyl-prolyl cis-trans isomerase FKBP14 precursor [Source:RefSeq peptide;Acc:NP_001013228] |
Retrocopy-Parental alignment summary:
>retro_rnor_49
ATGAGGTTTTTCTTGTGGAACGCTATCTTGGCACTGTGGGTCACGGTTCTGAGCGGAGCTCTGATTCCTGAGCCAGAAGT
GAAAATCGAAGTTCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAGGGAGGGGATCTGATGTTGGTCCACTACGAAG
GCTATTTAGAAAAGGACGGCTCCCTGTTTCATTCCACTCACAAACATAACAATGGTCAGCCTGTCTGGTTCACCCTGGGC
ATACTGGAGGTTCTCAAAGGCTGGGACCAAGGCTTGAAGGGAATGTGTGTGGGAGAGAAGCGAAAGCTCACCGTTCCTCC
TGCCCTGGGCTATGGCAAAGAAGGAAAAGGTAAAATCCCTCCAGAGAGCACACTGATATTCAACATTGACCTCCTGGAAA
TTCGAAATGGCCCAAGGTCCCACGAGTCGTTTCAAGAAATGGACCTCAATGACGACTGGAGACTCTCTAAGCATGAGGTT
AAAGTGTATTTACAGAAGGAGTTTGAGAAGCACGGTGCCGTGGTGAATGAAAGCCATCACGATGCTTTGGTGGAAGATAT
TTTTGATAAAGAAGATGAAGACAAAGATGGATTTATATCTGCC
ORF - retro_rnor_49 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 97.51 % |
| Parental protein coverage: | 95.26 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MRFFLWNANLTLWVTVLSGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHN |
| MRFFLWNA.L.LWVTVLSGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHN | |
| Retrocopy | MRFFLWNAILALWVTVLSGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHN |
| Parental | NGQPVWFTLGILEVLKGWDQGLKGMCVGEKRKLTIPPALGYGKEGKGKIPPESTLIFNIDLLEIRNGPRS |
| NGQPVWFTLGILEVLKGWDQGLKGMCVGEKRKLT.PPALGYGKEGKGKIPPESTLIFNIDLLEIRNGPRS | |
| Retrocopy | NGQPVWFTLGILEVLKGWDQGLKGMCVGEKRKLTVPPALGYGKEGKGKIPPESTLIFNIDLLEIRNGPRS |
| Parental | HESFQEMDLNDDWKLSKHEVKVYLQNEFEKHGAVVNESHHDALVEDIFDKEDEDKDGFISA |
| HESFQEMDLNDDW.LSKHEVKVYLQ.EFEKHGAVVNESHHDALVEDIFDKEDEDKDGFISA | |
| Retrocopy | HESFQEMDLNDDWRLSKHEVKVYLQKEFEKHGAVVNESHHDALVEDIFDKEDEDKDGFISA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 3 .45 RPM |
| SRP017611_kidney | 0 .00 RPM | 7 .05 RPM |
| SRP017611_liver | 0 .00 RPM | 2 .89 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_49 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_49 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_49 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000009886 | 1 retrocopy |
retro_rnor_49 ,
|
| Rattus norvegicus | ENSRNOG00000021153 | 1 retrocopy |