>retro_rnor_533
GTGGATTGTAAAATTGAATACACTTGGGATAGTTTTCCAGTAAGTCAGGAGCCAGTGCGTGCCAGGCTGAATCCATGTGA
CAAGGGATTGAAGATGGAGGTTACTGCTCCATATTTCAGTGATCCTCTAGCCCCTCTTGGAGAACCAGGAAAGCCTTTCA
GTGAACTGTGGAATTATGAAGTTGTGGAAGCATTCTTCTTGAATGATACCACTGAGCAGTATTTAGAAGTTGAACTTTGT
CCACATGGACAACATTTAGTTCTTTTACTTCCTGGAAGAAAAAATGTTTGGGAAAAAAGAGCTTGCATTATCATTCAAAG
TGTCCAGAGGAGAGACTCATTGGGAAGGTGAAGCTTATCTTCCTTGGGGTTATTTTCCATCTAATGTGACACGATTCAAC
TCATTTGCAATCCATGGATCAAATGATAGAAGAGTTTATGAAGCGCTTTACCCTGCGCCACAACCTGAGCTGCAACAAGG
ACAAAATCCTGACTTCCATCGTCTAAAATATTTCAAGCCTTTCAGTTTTAACACACTGCTTGGAGAAGAGTGGAAGCAGC
CAGAATCAGACCTGTGGCTGATAGAGAAATCCGATGTA
ORF - retro_rnor_533 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.5 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MDFKIEYTWDSFPVSHEPVRIRLNPCDKGLKMEVSAPFFNDPPAPLGEPGKPFSELWNYEVVEAFFLNNT |
| .D.KIEYTWDSFPVS.EPVR.RLNPCDKGLKMEV.AP.F.DP.APLGEPGKPFSELWNYEVVEAFFLN.T |
Retrocopy | VDCKIEYTWDSFPVSQEPVRARLNPCDKGLKMEVTAPYFSDPLAPLGEPGKPFSELWNYEVVEAFFLNDT |
|
Parental | TEQYLEVELCPHGQHLVLLLSGRRNVW-KKELALSFKVSRGETHWEGEAFLPWSYFPSKVTRFNSFAIHG |
| TEQYLEVELCPHGQHLVLLL.GR.NVW.KKELALSFKVSRGETHWEGEA.LPW.YFPS.VTRFNSFAIHG |
Retrocopy | TEQYLEVELCPHGQHLVLLLPGRKNVW>KKELALSFKVSRGETHWEGEAYLPWGYFPSNVTRFNSFAIHG |
|
Parental | SNDKRVYEALYPVPQPELQQGQNPDFHRLEYFKPFSFNTLLGEEWKQPESDLWLIEKSDI |
| SND.RVYEALYP.PQPELQQGQNPDFHRL.YFKPFSFNTLLGEEWKQPESDLWLIEKSD. |
Retrocopy | SNDRRVYEALYPAPQPELQQGQNPDFHRLKYFKPFSFNTLLGEEWKQPESDLWLIEKSDV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
2 .37 RPM |
SRP017611_kidney |
0 .00 RPM |
4 .88 RPM |
SRP017611_liver |
0 .00 RPM |
3 .43 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_533 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_533 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_533 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.