RetrogeneDB ID: | retro_sara_157 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | GeneScaffold_5009:135999..136311(-) | ||
| Located in intron of: | ENSSARG00000010185 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AKAP14 | ||
| Ensembl ID: | ENSSARG00000000322 | ||
| Aliases: | None | ||
| Description: | A kinase (PRKA) anchor protein 14 [Source:HGNC Symbol;Acc:24061] |
Retrocopy-Parental alignment summary:
>retro_sara_157
GTGTGGGAGCACGAGTCCCGCTGGGTGCATCACACCGAGTTCCAGGGCCGGGAAGACCTGGGCCACAGCTTCCTCTACCG
CTACTGCGTCTACTGGAGCGTCCCCACCGCCCAGGTCCCCCTCCCCAAAGTGCAGACCACCACGGACTTCACCATCAAGT
TCAACAAAAACAAGCCCCCCGACGCGCCCGTGGACATCTCCTACACCATGGACCACCAGAGCCTGGTTCAGAAGCCGGGA
GAGGGGCCGTTCCGGGAAAAGTGGCTGAGAGATTTCCTGCTCGCAAAGTACATTCTGCTGGAGTCCGTCCCC
ORF - retro_sara_157 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.31 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MWNHNLHRVHYTEFQGIKDLGDSFLYLYCVYWSMPTAQIPVPR---NLSFTIEFNKNKPPEAPVDIYYKM |
| .W.H....VH.TEFQG..DLG.SFLY.YCVYWS.PTAQ.P.P.......FTI.FNKNKPP.APVDI.Y.M | |
| Retrocopy | VWEHESRWVHHTEFQGREDLGHSFLYRYCVYWSVPTAQVPLPKVQTTTDFTIKFNKNKPPDAPVDISYTM |
| Parental | DHQSLILKPERTPLREKWLRDFLVAKHTLLESVP |
| DHQSL..KP...P.REKWLRDFL.AK..LLESVP | |
| Retrocopy | DHQSLVQKPGEGPFREKWLRDFLLAKYILLESVP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_157 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000000322 | 1 retrocopy |
retro_sara_157 ,
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