RetrogeneDB ID: retro_sara_19

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_3226:205..616(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSSARG00000014110
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000013451
• Aliases: None
• Description: None

Sequence

>retro_sara_19
ATGGCGGGGGCTGGTTCCGCCGCCGTGTCTGGAGCGGGGACCCCGGTGGCGGGGCCCGCAGGCCGCGACTTGTTCGCCGA
GGGGCTCCTGGAGTTCTTGCGGCCGGCCGTGCAGCAGCTCGTCTCTCACGTGCACGCTGTCAGAGAGAGCCAGGTAGAGC
TTCGGCAGCAAATTGACAACCTGGCCATCGAGCTCTGCCGCATCAACGAGGATCAGAAGGTGGCCCTGGATCTCGATCCC
TACGTAAAGAAGCTTCTCAATGCCCGGCGTCGAGTCGTCTTGGTCAACAACATTCTGCAGAACGCCCAGGAACGGCTGAG
GAGGCTAAACCACAGTGTTGCCAAGGAAACCACTCGTAGGAGGGCGATGCTGGACTCAGGAGTTTACCCCCCTGGCTCCC
CAAGCAAGTAA

Alignment

ORF - retro_sara_19 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.59 %
• Parental protein coverage: 65.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ESQVELREQIDNLATELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETA
          ESQVELR.QIDNLA.ELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKET.
Retrocopy ESQVELRQQIDNLAIELCRINEDQKVALDLDPYVKKLLNARRRVVLVNNILQNAQERLRRLNHSVAKETT

Parental  RRRAMLDSGVYPPGSPSK
          RRRAMLDSGVYPPGSPSK
Retrocopy RRRAMLDSGVYPPGSPSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_19 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003301	1 retrocopy	retro_chof_723,
Callithrix jacchus	ENSCJAG00000010373	1 retrocopy	retro_cjac_742,
Dasypus novemcinctus	ENSDNOG00000015216	1 retrocopy	retro_dnov_1023,
Mus musculus	ENSMUSG00000001018	1 retrocopy	retro_mmus_1257,
Sorex araneus	ENSSARG00000013451	1 retrocopy	retro_sara_19 ,