RetrogeneDB ID: | retro_sara_229 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | scaffold_114179:520..913(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAL2 | ||
| Ensembl ID: | ENSSARG00000001514 | ||
| Aliases: | None | ||
| Description: | mal, T-cell differentiation protein 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:13634] |
Retrocopy-Parental alignment summary:
>retro_sara_229
CTGTTCGGGGGCCTCGTCTGGATTCTGGTGGCCTACTCCCGCGTCCCTCTCCCTCTGCTGCAAGGATGGGTGATGTTCGT
GTCCGTGACAGCATTCGTCTTCTCCCTTTTCTTCCTGGGCGTGTTCCTCTCCGGCAAGACCAAGACTGATGCCGACTGGA
AGTTCCTGGATTTGGTTTACCACTCAGTAGTGTTTGTCTGTTACTTCGTAGCCTTTTTACTGGAAGCAGTAGCCACCTTC
CTGCAAAATCGTTGGGTTTGCAGTGCAGCCTTGGCTGGGACGCGGCTCATGGATGACAACCAGTATCGCATCAACGTAGC
CGCCACAATTTTTGCCTTCGTGACCAAAGCTTGTTATGGTTACAGTGTGTGTCTGGCTTTACTGAGATGGCGA
ORF - retro_sara_229 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.39 % |
| Parental protein coverage: | 99.24 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LFGGLVWILVAYSRVPLPLLQGWVMFVSVTAFVFSLFFLGVFLSGKTKTDAXXXXXDFVYHFIVFVFYFG |
| LFGGLVWILVAYSRVPLPLLQGWVMFVSVTAFVFSLFFLGVFLSGKTKTDA.....D.VYH..VFV.YF. | |
| Retrocopy | LFGGLVWILVAYSRVPLPLLQGWVMFVSVTAFVFSLFFLGVFLSGKTKTDADWKFLDLVYHSVVFVCYFV |
| Parental | AFLLEAAATSLHNLRGCNATLAETPLLDDNQYNINVAATIFAFVTTACYGCSLGLALRRWR |
| AFLLEA.AT.L.N...C.A.LA.T.L.DDNQY.INVAATIFAFVT.ACYG.S..LAL.RWR | |
| Retrocopy | AFLLEAVATFLQNRWVCSAALAGTRLMDDNQYRINVAATIFAFVTKACYGYSVCLALLRWR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_229 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000001514 | 2 retrocopies |
retro_sara_229 , retro_sara_553,
|
| Tupaia belangeri | ENSTBEG00000001716 | 1 retrocopy |