RetrogeneDB ID: | retro_sara_233 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | scaffold_117737:300..681(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSSARG00000008136 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_sara_233
CCTGAACTCACCGGTGTTTTATTTTCTCTTTATTCAGGGATCTGGGCACAGACAGCTCTGTCTCAGCCTCCCTCAGTGTC
TGGGACTCAGGGACAGACAGTCACCATCTCCTGTACAGGAACAAGCAATGACATTGGGAGATATGACTATGTCTCCTCGT
TCCAGCAGCAGGAGGGCACAGCCCCCAAAATGCTGATATATAATGTCAATAAGCGGCCGTCAGGGAGCCCTGATCGCTTC
TCTGGCTCCAAGTCTGGCAACACAGCGACCTTGACCATCTCTGGGCTCAAGGCTGAGGATGAGACTGATTATTACTGTAT
ATCATATGTAAGTGGTGACACTTTCCACAGTAGCTTCTATATACAGGGAAGTGAGACAAAA
ORF - retro_sara_233 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.02 % |
| Parental protein coverage: | 52.94 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | PLLLGLLVHC-TGIWAQSALTQPPSVSGTPGQTVTISCTGTSNDIGGYNLVSWYQQQEGTAPKMLIYDVN |
| P.L.G.L.....GIWAQ.AL.QPPSVSGT.GQTVTISCTGTSNDIG.Y..VS..QQQEGTAPKMLIY.VN | |
| Retrocopy | PELTGVLFSLYSGIWAQTALSQPPSVSGTQGQTVTISCTGTSNDIGRYDYVSSFQQQEGTAPKMLIYNVN |
| Parental | KRPSGIPDRFSGSKSGNTATLTISGLRPEDELDYYCGSYRRGGQHSSLCYIFGAGTK |
| KRPSG.PDRFSGSKSGNTATLTISGL..EDE.DYYC.SY..G....S..YI.G..TK | |
| Retrocopy | KRPSGSPDRFSGSKSGNTATLTISGLKAEDETDYYCISYVSGDTFHSSFYIQGSETK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_233 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000008136 | 1 retrocopy |
retro_sara_233 ,
|