RetrogeneDB ID: retro_sara_34

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: GeneScaffold_764:814315..814876(+)
• Located in intron of: ENSSARG00000001343

Retrocopy information

• Ensembl ID: ENSSARG00000001361
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000011291
• Aliases: None
• Description: None

Sequence

>retro_sara_34
TCTGGCCCGGCCGTGTTGAGCCGCCTGCGCGACTCTGCGGTGGTGCGGCCTGGTTTCCTGAGCGCGGTCGAAGAGGAGAT
GCTGAGCCGTGAGCTGGAACTCGAGCTGCGCCGCCGCCACTACGAATATGGCCACTGGGACGCGGCCATCCACGGCTTCC
GAGAGACTGGAAAGGCGTGCTGGACAGCGGCAAGCCGGGCCATCCTGCAGCGCGTGCAGGCGGCTGCCTTTGGCCCTAAC
CAGACCCTGCTGTCCTCCGTGCACTTACTGGACCTGGAACCTCGAGGCTACATCAAGCCCCACGTGGACAGCGTCAAGTT
TTGCGGAGACACCATCGCCGGCCTGTCCCTGCTGTCTCCCAGCGTCATGCGGCTCGTCCACACCCAGGAACCTGGGGAAT
GGCTGGAGCTCTTGCTGGAGCCAGGCTCCCTGTACATCCTTAGGGGCTCAGCCCGCTATGACTTCTCCCAGGAGATCCTT
AGAGATGAAGAGTCGTACTTTGGGGATCGTCCGGTAGCCCAAGGCCGCCACATCTCAGTGATTTGCGGCTCCCTGCCAGG
G

Alignment

ORF - retro_sara_34 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.47 %
• Parental protein coverage: 85.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SGPAVLSRLRDAAVVRPGFLSAAEEETLSRELEPELRRRRYEYDHWDAAIHGFRETEKARWTAASRAILQ
          SGPAVLSRLRD.AVVRPGFLSA.EEE.LSRELE.ELRRR.YEY.HWDAAIHGFRET.KA.WTAASRAILQ
Retrocopy SGPAVLSRLRDSAVVRPGFLSAVEEEMLSRELELELRRRHYEYGHWDAAIHGFRETGKACWTAASRAILQ

Parental  RVQAAAFGPNQTLLSSVHVLDLEPRGYIKPHVDSVKFCGDTIAGLSLLSPSVMRLVHTQEPGEWLELLLE
          RVQAAAFGPNQTLLSSVH.LDLEPRGYIKPHVDSVKFCGDTIAGLSLLSPSVMRLVHTQEPGEWLELLLE
Retrocopy RVQAAAFGPNQTLLSSVHLLDLEPRGYIKPHVDSVKFCGDTIAGLSLLSPSVMRLVHTQEPGEWLELLLE

Parental  PGSLYILRGSARYDFSHEILRDEESYFGDRRVARGRRISVICRSLP
          PGSLYILRGSARYDFS.EILRDEESYFGDR.VA.GR.ISVIC.SLP
Retrocopy PGSLYILRGSARYDFSQEILRDEESYFGDRPVAQGRHISVICGSLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_34 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000011291	1 retrocopy	retro_sara_34 ,