RetrogeneDB ID: | retro_sara_348 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | scaffold_174924:8280..8973(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAPK13 | ||
| Ensembl ID: | ENSSARG00000006324 | ||
| Aliases: | None | ||
| Description: | mitogen-activated protein kinase 13 [Source:HGNC Symbol;Acc:6875] |
Retrocopy-Parental alignment summary:
>retro_sara_348
TACCTAGTGATGCCTTTTATGCAAACGGACCTGCAGAAGCTCATGGGCGTGGAGTTCAGTGAGGACAAAGTCCAGTTCCT
GGTATATCAGATGTTTAAGGGTCTCAAGTTATATCCACTCGGCGGGGGTTGTCCATAGGGACCTGAAGCCGGGCACCCTG
GCTGTGAACGAGGACTGTGAACTGAAGATCTTGGATTTGGGGCTGGCACGGCACGCGGATGCGGAAATGACGGGCTACGT
GGTGACAGGCTGGTACCGTGCCCCGGAGGTGATCCTCAGCTGGATGCACTACAACCAGACGGTGGATATCTGGTCTGTGG
GCTGCGTCATGGCTGGAGATGCTGACGGGCAGGACTCTGTTCAAAGGGAAAGATTACCTGGACCAGCTGTCGCGGATCCT
GAAGGTGACAGGGGTTGCCGGGCGCAGAGTTTGTCCAGAAGTTGAAGGATAAGGCGGCCAAACCCTACATCCAGTCCCTG
CCCCAGAGCCCCAAGAAGGACTTTTCTCAGCTCTTCCCACGTGCCAGCCCCGAGACCACCAACCTGCTGGATGTGGACAA
ACGTCTGACGGCCACGCAGGCCCTCGCCCATCCATTCTTCGAGCCCTTCCTGGAGCCCGAGGAGGAGCCGGTGGCCCTGC
AGCCCTTTGAAGATGCCTTGGAGCACGAGAAACTCACGGTGGACGAGTGGAAG
ORF - retro_sara_348 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.1 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | YLVMPFMQTDLQKLMGVEFSEDKVQYLVYQMFKGLK-YIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA |
| YLVMPFMQTDLQKLMGVEFSEDKVQ.LVYQMFKGLK.YIHSAGVVHRDLKPG.LAVNEDCELKILD.GLA | |
| Retrocopy | YLVMPFMQTDLQKLMGVEFSEDKVQFLVYQMFKGLK>YIHSAGVVHRDLKPGTLAVNEDCELKILDLGLA |
| Parental | RHADAEMTGYVVTRWYRAPEVILSWMNYNQTVDIWSVGCIMA-EMLTGRTLFKGKDYLDQLSQILKVTGV |
| RHADAEMTGYVVT.WYRAPEVILSWM.YNQTVDIWSVGC.MA.EMLTGRTLFKGKDYLDQLS.ILKVTGV | |
| Retrocopy | RHADAEMTGYVVTGWYRAPEVILSWMHYNQTVDIWSVGCVMA>EMLTGRTLFKGKDYLDQLSRILKVTGV |
| Parental | -PGAEFVQKLKDKAAKSYIQSLPQSPKKDFSQLFPRASPEATDLLEKILELDVDKRLTATQALAHPFFEP |
| .PGAEFVQKLKDKAAK.YIQSLPQSPKKDFSQLFPRASPE.T.LL.....L.....L........PF.EP | |
| Retrocopy | >PGAEFVQKLKDKAAKPYIQSLPQSPKKDFSQLFPRASPETTNLLDVDKRLTATQAL--AHPFFEPFLEP |
| Parental | FREPEEETVALQPFEDALENEKLTVDEWK |
| ....EEE.VALQPFEDALE.EKLTVDEWK | |
| Retrocopy | ----EEEPVALQPFEDALEHEKLTVDEWK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_348 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000006324 | 1 retrocopy |
retro_sara_348 ,
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