RetrogeneDB ID: retro_sara_435

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_206976:12..996(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSARG00000013888
• Aliases: None
• Description: None

Sequence

>retro_sara_435
GTGGCCGGGCAGGATGCTGAGCTGCAGGTGATCCAGCCTGACAAGCTCGTGTCGGTGGCTTCGGGAGAGACGGCCACTCT
GCGCTGCTCTGTGACCTCCCTGCTTCCCGTGGGTCCTGTCAAGTGGTCCCGGGAGAGATTGGGTAGCCGGGAGGAGATCT
ACAACTTCGGAGGCAAAGGCCACTACCCCCGAGTGACCATTGCTTCGGATATCACCAAGAGAGACAACGAGGACTTTTCC
ATCCGCATCCGTGACATCAGCCCAGCTGACACGGGCACCTACTACTGTGTGAAGTTCCGGAAGGGGAGCACGGAAGATGT
GGCGTTCAAGTCTGGGTCAGGCACCCAGGTCACCGTGAGTGCCAAACCTTCTCGTCCCGAGGTCTTGGGTCCCAAGTCGA
GGGCCCTGCCCGGGCAGACAGTGACCTTCACCTGCAAGTCCCACGGCTTCTCCCCCAGAGACATCACCCTGCGATGGTTC
AAAAACGGGAACGCGCTCTCGGCCACCCGGACCAACGTGAACACCCAGGGGGACAGCACCTCCTACAGCGTCTCCAGCAC
AGCCAGGGTGCCGCTGACCTCGGGGGACGTGCGCTCCCAGGTCATCTGTGAGGTCACCCACATCACCCTGCCCAGGGGCA
CTTCTCTCCGTGGGATGGCCAGCTTGGCTGAGACTATTCGAGTTCCTCCCACGCTGGAGGTGTCCCAGTTCCCGGCGGTG
GGCAACCAGGTGAACCTCACCTGCCAGGTGAAGAAGTTCTACCCCCAGCACCTGCAGCTGACCTGGCTGGAGAATGGAAA
TGTGTCCCGGACAGAAACGACCTCCCTCCTCCTACAGAACAAGGACGGGACCTTTAACCGGACCAGCTGGCTCCTGGTGA
ACTCCTGTGCCCACCGGGAGAACGTGCCGTTCACCTGCCAGGTGGAGCACGATGGGCAGCCGGCGCTCACCAAATCGCAC
ACCCTGGGCTCAAACGAACAACCT

Alignment

ORF - retro_sara_435 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.17 %
• Parental protein coverage: 83.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VAGQDAELQVIQPDKLVSVASGETATLRCSVTSLLPVGPVKWSGE-IGSREEIYNFGGKGHYPRVTIASD
          VAGQDAELQVIQPDKLVSVASGETATLRCSVTSLLPVGPVKWS.E..GSREEIYNFGGKGHYPRVTIASD
Retrocopy VAGQDAELQVIQPDKLVSVASGETATLRCSVTSLLPVGPVKWSRERLGSREEIYNFGGKGHYPRVTIASD

Parental  ITKRDNEDFSIRIRDISPADTGTYYCVKFRKGSTEDVAFKSGSGTQVTVSAKPSRPEVLGPKSRALPGQT
          ITKRDNEDFSIRIRDISPADTGTYYCVKFRKGSTEDVAFKSGSGTQVTVSAKPSRPEVLGPKSRALPGQT
Retrocopy ITKRDNEDFSIRIRDISPADTGTYYCVKFRKGSTEDVAFKSGSGTQVTVSAKPSRPEVLGPKSRALPGQT

Parental  VTFTCKSHGFSPRDITLRWFKNGNALSATRTNVNTQGDSTSYSVSSTARVPLTSGDVRSQVICEVTHITL
          VTFTCKSHGFSPRDITLRWFKNGNALSATRTNVNTQGDSTSYSVSSTARVPLTSGDVRSQVICEVTHITL
Retrocopy VTFTCKSHGFSPRDITLRWFKNGNALSATRTNVNTQGDSTSYSVSSTARVPLTSGDVRSQVICEVTHITL

Parental  -QGHSLRGMASLAETIRVPPTLEVSQFPAVGNQVNLTCQVKKFYPQHLQLTWLENGNVSRTETTSLLLQN
          ..G.SLRGMASLAETIRVPPTLEVSQFPAVGNQVNLTCQVKKFYPQHLQLTWLENGNVSRTETTSLLLQN
Retrocopy PRGTSLRGMASLAETIRVPPTLEVSQFPAVGNQVNLTCQVKKFYPQHLQLTWLENGNVSRTETTSLLLQN

Parental  KDGTFNRTSWLLVNSCAHRENVPFTCQVEHDGQPALTKSHTLGSNEQP
          KDGTFNRTSWLLVNSCAHRENVPFTCQVEHDGQPALTKSHTLGSNEQP
Retrocopy KDGTFNRTSWLLVNSCAHRENVPFTCQVEHDGQPALTKSHTLGSNEQP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_435 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000198053	1 retrocopy	retro_hsap_2554,
Sorex araneus	ENSSARG00000013888	1 retrocopy	retro_sara_435 ,