RetrogeneDB ID: | retro_sara_618 | ||
Retrocopy location | Organism: | Shrew (Sorex araneus) | |
| Coordinates: | scaffold_242044:45023..45353(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ASRGL1 | ||
| Ensembl ID: | ENSSARG00000012493 | ||
| Aliases: | None | ||
| Description: | asparaginase like 1 [Source:HGNC Symbol;Acc:16448] |
Retrocopy-Parental alignment summary:
>retro_sara_618
TTGGTGGTCCTGGAGAACAACCCTGAGTTCAACGCAGGTTGTAACTCTGTATTGAACTCAATTGGTGAGTTTGAAATGGA
TGAGAGCATCATGGACGGGAAAGACCTGTCGCCGGGAGCTGTGTCCTCCATCTGCTGCATCACAAACCCCATCAAACTGG
CCCGGCTGGTGATGGAGAAGACATCTCATTGCTTTCTGACTGACCATGGCACAGCAAGATTTTCAGCCTCCATGGGGATT
ACACAGGTTTCCAGAGAGCACCTAGTGACGGAGAGAAACTAAAGACACCTGGAAAAAGAGAAAAAAGGCCAACAGAAGAC
AGACTGCGAG
ORF - retro_sara_618 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.91 % |
| Parental protein coverage: | 68.32 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VVVLENDPEFNAGCGSVLNTIGEVEMDASIMDGKDLSAGAVSAVRCIANPIKLARLVMEKTAHCFLPGQG |
| .VVLEN.PEFNAGC.SVLN.IGE.EMD.SIMDGKDLS.GAVS...CI.NPIKLARLVMEKT.HCFL...G | |
| Retrocopy | LVVLENNPEFNAGCNSVLNSIGEFEMDESIMDGKDLSPGAVSSICCITNPIKLARLVMEKTSHCFLTDHG |
| Parental | TARFAASTGTAQVSREHLVTERNLRHLEKEKRGQQKTDCE |
| TARF.AS.G..QVSREHLVTERN.RHLEKEK.GQQKTDCE | |
| Retrocopy | TARFSASMGITQVSREHLVTERN*RHLEKEKKGQQKTDCE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_618 was not experimentally validated.
Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorex araneus | ENSSARG00000012493 | 1 retrocopy |
retro_sara_618 ,
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