RetrogeneDB ID: | retro_sbic_57 | ||
Retrocopy location | Organism: | Sorghum (Sorghum bicolor) | |
| Coordinates: | 6:46784470..46784711(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Sb08g003070 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_sbic_57
GGGGCGGAGGTGAGGCCGATTACGAGGTCTCCGACGACCACCGCGCCGCGTGGGAGCGTCACGAGCAATCGGTGTAGGAG
CTCCTCTAGCGGCGCCGCGCCTACGCCATGGCCGTGCGGGCCTGCCTCCGCCGCTTTGGCGAGCGTGAAATGGAGCGCCA
CGACCGCCTCCGAGCCCTCATGGTCCGGCTCGAGGTCGATGGCCAGGTCGATCGTCTCCTCCGCGCGCTAGGAGGACGAC
C
ORF - retro_sbic_57 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 78.41 % |
| Parental protein coverage: | 52.1 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | GVEARPTTRSPTTTAPCGSVTSNWCRSSSSGAAPTPWPCGPASAASARRPRTLASAKWSATTASEPSWSG |
| G.E.RP.TRSPTTTAP.GSVTSN.CRSSSSGAAPTPW...P...ASA.....LAS.KWSATTASEPSWSG | |
| Retrocopy | GAEVRPITRSPTTTAPRGSVTSNRCRSSSSGAAPTPW---PCGPASA----ALASVKWSATTASEPSWSG |
| Parental | SRPMARSIVSSAR-RRTT |
| SR.MARSIVSSAR.RRTT | |
| Retrocopy | SRSMARSIVSSAR>RRTT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sorghum bicolor was not studied using RNA-Seq expression data.
Sorghum bicolor was not studied using ChIP-Seq data.
Sorghum bicolor was not studied using EST data.
Sorghum bicolor was not studied using FANTOM5 data.
retro_sbic_57 was not experimentally validated.
Retrocopy orthology:
Sorghum bicolor does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sorghum bicolor | Sb08g003070 | 1 retrocopy |
retro_sbic_57 ,
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