RetrogeneDB ID: | retro_shar_13 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834667.1:1722317..1723376(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000015205 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000009246 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.98 % |
Parental protein coverage: | 96.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SVKEFLAKAKEEFLKKWESPPQQSTVQLDQFDRIKTLGTGSFGRVILVKHKESGNYFAMKVLDKQKVVKL |
.VK.FLAKAKEEFL.KWE.PP..S..QLD.F...KTLGTGSFGRVILVKHKESGNY.AMKVLDKQKVVKL | |
Retrocopy | TVKDFLAKAKEEFLRKWENPPPSSPIQLDHFEKFKTLGTGSFGRVILVKHKESGNYYAMKVLDKQKVVKL |
Parental | KQIEHTMNEKRILQAINFPFLVRLEYSFKDNTNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVL |
KQIEHT.NEKRILQ...FPFLVRLE..FKDNTNLY.VM.YVPGGEMFSHLRR.GRFSE.HARFYA.QIVL | |
Retrocopy | KQIEHTLNEKRILQSVDFPFLVRLEFAFKDNTNLYLVMDYVPGGEMFSHLRRLGRFSEAHARFYASQIVL |
Parental | TFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWW |
TFEYLHSLDLI.RDLKPENLLID.QGYIQ.TDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWW | |
Retrocopy | TFEYLHSLDLIHRDLKPENLLIDRQGYIQMTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWW |
Parental | ALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRYGNLKNGVNDIK |
ALGVLIYEMAAGYPPFFA.QPI.IYEKI..GKVRFPSHFS.DLKDLLRNLLQV.LTKRYGNLKNGV.DIK | |
Retrocopy | ALGVLIYEMAAGYPPFFAEQPIKIYEKIIAGKVRFPSHFSPDLKDLLRNLLQVNLTKRYGNLKNGVSDIK |
Parental | NHKWFATTDWIAIYQRKVEAPFIPKCKGPGDTSNFDDYEEEELRISITEKCAKEFADF |
NHKWF.T.DWIAIYQ.KV.AP.IPK..G.GDTSNFDDYEE.ELRISI.EKCAKEFADF | |
Retrocopy | NHKWFSTIDWIAIYQKKVDAPLIPKYRGAGDTSNFDDYEEQELRISINEKCAKEFADF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000072062 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013294 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002017 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000012087 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010585 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009246 | 2 retrocopies |
retro_shar_13 , retro_shar_49,
|