>retro_shar_34
ATGGCTACAGAAAAGCAACCCGAGACCGAAGCCCCGAGAACACAGCAAACACCTTCATCCACCAATCAAAGCAAGCTTGC
ACCTCCCAATCCAAACTACACATTAAAATTTACATTAGTGGGGCATACAAAAGCTGTATCTTCGGTAAAATTTAGCCCCA
ATGGAGAATGGTTAGCGAGTTCTTCTGCTGATAAGCTCATTAAAATTTGGGGAGCATATGATGGAAAATGTGAGAAAACT
ATATCTGGGCACAAACTAGAAATCTCTGATGTTGCCTGGTCTTCAGATTCCAACCTTCTTGTGTCTGCCTCAGATGATAA
AACTCTTAAAATCTGGGATGTGAGCTCGGGAAAATGTCTAAAAACCCTGAAGGGACACAGTAATTACGTCTTTTGCTGTA
GCTTCAATCCCCTATCCAACCTCGTCGTTTCCGGCTCTTTTGATGAAAGCATAAGGATATGGGATGTGAAAACAGGAAAG
TGCCTCAAGACTTTGCCGGCTCACTCCGACCCAGTAACAGCTGTGCATTTTAATAGTGACGGATCTTTGATTGTGTCGAG
TAGTTATGATGGTCTCTGCCGAATCTGGGATACTGCGTCAGGTCAATGTTTAAAAACTCTTATTGGTGATGATAATCCTC
TTGTGTCTTTTGTAAAATTCTCTCCGAATGGTAAATACATTCTTACGGCAACTCTGGATAACCTTCTTAAGCTATGGGAC
TACAGCAAGGGGAGGTGCCTAAAGACATACACTGGTCACAAGAATGAGAAATACTGTATTTTTGCAAACTTTTTAGTCAC
TGGTGGAAAATGGATTGTGTCCGGATCAGAAGATAATCTTGTTTACATTTGGAACCTTCAGACAAAAGAGATTGTGCAGA
AATTACAAGGTCATACAGATGTTGTAATCTCCACAGCTTGTCACCCCACAGAAAACATAATTGCATCAGCTGCATTAGAA
AATGATAAAACGATTAAACTCTGGAGGAGTGACTATTAA
ORF - retro_shar_34 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.59 % |
Parental protein coverage: |
99.7 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MATEEKKPEAEATKTQSAPSSSTNQSKPAPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIK |
| MATE.K.PE.EA..TQ..PSS.TNQSK.AP..PNY.LKFTL.GHTKAVSSVKFSPNGEWLASSSADKLIK |
Retrocopy | MATE-KQPETEAPRTQQTPSS-TNQSKLAPPNPNYTLKFTLVGHTKAVSSVKFSPNGEWLASSSADKLIK |
|
Parental | IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ |
| IWGAYDGK.EKTISGHKL.ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC.FNP. |
Retrocopy | IWGAYDGKCEKTISGHKLEISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCSFNPL |
|
Parental | SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI |
| SNL.VSGSFDES.RIWDVKTGKCLKTLPAHSDPV.AVHFN.DGSLIVSSSYDGLCRIWDTASGQCLKTLI |
Retrocopy | SNLVVSGSFDESIRIWDVKTGKCLKTLPAHSDPVTAVHFNSDGSLIVSSSYDGLCRIWDTASGQCLKTLI |
|
Parental | DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED |
| .DDNP.VSFVKFSPNGKYIL.ATLDN.LKLWDYSKG.CLKTYTGHKNEKYCIFANF.VTGGKWIVSGSED |
Retrocopy | GDDNPLVSFVKFSPNGKYILTATLDNLLKLWDYSKGRCLKTYTGHKNEKYCIFANFLVTGGKWIVSGSED |
|
Parental | NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD |
| NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW.SD |
Retrocopy | NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWRSD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_34 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
4 retrocopies.