RetrogeneDB ID: | retro_shar_372 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841531.1:25966..26432(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORMDL3 | ||
Ensembl ID: | ENSSHAG00000014339 | ||
Aliases: | None | ||
Description: | ORM1-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:16038] |
Percent Identity: | 54.38 % |
Parental protein coverage: | 95.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | KMNVGTAHSEVNPNTR-VMNSRGIWLSYV-LAIGLLHVV--LLSIPFVSVPVVWTLTNLIHNMGMYIFLH |
KMNV..AH.EVN.NTR.V..S..IWL....L.IGLLH.V...LS..F..........N.........FL. | |
Retrocopy | KMNVEVAHTEVNINTR<VISSCDIWLICF>LGIGLLHIVFSILSQHFLLQCLCCLDINGYYTYSENVFLY |
Parental | TVKGTPFETPD-QGKARLLTHWEQMDYGVQFTA-SRKFLTITPIVLYFLTSFYTKYDQLHFILNTVSLMS |
.V.G.PF.T.D.QG..RLL.H..Q..YG..FT...RKF.TI.PI.L.FL.SFYTK.D...F.LNTVSL.S | |
Retrocopy | SVRGIPFQTLD<QGETRLLIH*GQLNYGIEFTS<LRKFVTIFPIILHFLASFYTKDDPTQFFLNTVSLLS |
Parental | VLIPKLPQLHGVRIFGINKY |
VLIP..PQLH.V.IFGINKY | |
Retrocopy | VLIPPKPQLHNVQIFGINKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000031660 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000957 | 3 retrocopies | |
Mus musculus | ENSMUSG00000038150 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014339 | 1 retrocopy |
retro_shar_372 ,
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