RetrogeneDB ID: | retro_shar_486 | ||
Retrocopy location | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
| Coordinates: | GL849652.1:181839..182189(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSSHAG00000008497 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_shar_486
CATGGTAAAAGCCATGATTAGGGGACCTACAAATTTAAGAATGGTTGTCAATACATAGGAGAATGCCAAGAAAATAAAAA
ACTTGATCATGGTACTTTTTTCTATGCAGATAATTCAAAATATGAAGAAGACCAAGTAAATGTGAAAGGCATGGCTTTGG
AATTTATCACTATTCAAATAATGATACACATATAGGAGAATTGTTTGCTGGCCAAAGCCATGGGAAAGGAAATTACTTCT
ATGCTGATACTGGCTCAAAGTATGTTGATACTTAAATAAATGGACAACAGCTGGGAACAGGAGAATTCATACATCTAAAG
CGTACATACCAGGGCAAGTTCTTAGAGAAA
ORF - retro_shar_486 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.1 % |
| Parental protein coverage: | 58.5 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | YGKRHGQGIYKFKNGCQYIGQYQENKKHGHGVFFYADGSKYEGNWVND-ERQGFGVYKYANQDTYKGQWF |
| .GK.H..G.YKFKNGCQYIG..QENKK..HG.FFYAD.SKYE...VN..ER.GFG.Y.Y.N.DT..G..F | |
| Retrocopy | HGKSHD*GTYKFKNGCQYIGECQENKKLDHGTFFYADNSKYEEDQVNV<ERHGFGIYHYSNNDTHIGELF |
| Parental | AGQRHGRGTYYYAETGSKYVGTWIYGQQQGTGELIHQKHRYQGKFMGK |
| AGQ.HG.G.Y.YA.TGSKYV.T.I.GQQ.GTGE.IH.K..YQGKF..K | |
| Retrocopy | AGQSHGKGNYFYADTGSKYVDT*INGQQLGTGEFIHLKRTYQGKFLEK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_486 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sarcophilus harrisii | ENSSHAG00000008497 | 1 retrocopy |
retro_shar_486 ,
|