>retro_shar_547
GTGAGTCAAGGGAATGGAGCATTAGAAATCCTTTAGCTCAACATAGTAGAAATGACAGATGAACATGCAGCCTTGGTTGG
TGGAGATGTTTAATTCACAGGCAGGAAATTTTTTGTGCATCTCTTCAGAAGGATGAATCAATGTGGAACAGAAATCCTGG
CTGATGCTTTCAGGATTAAGCTATTTCCACAGTACCAGTGGCAGATGCTCTGTATCTGAAAAATTTCCATAGCGTGGATG
GACCCAACTTGATTGCTGTGGGCTTCAGGGAACCTACATAAAAGCTTTCAAGATCATTCAGCAGGTGATTGACCACTGTT
ACAACAAACTGACAATGCTTAATGACATGGTCACAATCTGTGTGTATTTAATTATTCTGAACAAAGGGCTTGTCTTGTTG
CATCAAAGCCTGGGAAGAATACCTAGAGAGTGTCAAGGTATATGAAAAACTGAGGGACCACAGATAGATACCTGCCAGGA
ACACAGAGCTGGAAAAAATT
ORF - retro_shar_547 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
62.35 % |
Parental protein coverage: |
77.31 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | VDMMKGTLENLQLNIVEMTDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFK-DYAVSTVPVSD |
| V....G.LE.L.LNIVEMTDE.A.L.GGDV.FTGR.FFV.L..R.NQ.G.EILAD.F..D.A.STVPV.D |
Retrocopy | VSQGNGALEIL*LNIVEMTDEHAALVGGDV*FTGRKFFVHLFRRMNQCGTEILADAFR<D*AISTVPVAD |
|
Parental | TLHLKSFCSMAGPNLIAIGSSEPA-QKALKIMQQMSDHRYDKLTVPDDVAANCVYLNIPNKGHVLLH-RA |
| .L.LK.F.S..GPNLIA.G..EP...KA.KI.QQ..DH.Y.KLT...D....CVYL.I.NKG.VLLH..A |
Retrocopy | ALYLKNFHSVDGPNLIAVGFREPT<IKAFKIIQQVIDHCYNKLTMLNDMVTICVYLIILNKGLVLLH>KA |
|
Parental | PEEYPESAKVFEKLKDHMLIPVTNTELEKV |
| .EEY.ES.KV.EKL.DH..IP..NTELEK. |
Retrocopy | WEEYLESVKVYEKLRDHR*IPARNTELEKI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_547 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.