RetrogeneDB ID: retro_shar_64

Retrocopy location

• Organism: Tasmanian devil (Sarcophilus harrisii)
• Coordinates: GL864886.1:289994..290960(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSSHAG00000007157
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSHAG00000018726
• Aliases: None
• Description: None

Sequence

>retro_shar_64
ATGGAGTCAGATTTGAGCAGCTTCGACATTGACGCTCCGCGATGGGACCAGGCCACCTTCATAGGCCGCCTGAAACATTT
CTTCAACATCACGGACCCCCGCACGATTTTCGTTTCGGAGCAGATGCTCGACTGGGCCAAGATAATGGTTGAAAACAGCC
GGCGCGGGACCGTGCCCCCGGGCACGGACCGGGAGCAGCTGCTGTACGCCAAGAAGCTCTACGACTCGGCCTTCCACCCG
GACACCGGGGAGAAGATGAACGTGATCGGGCGGATGTCCTTCCAGCTGCCGGGAGGCATGGCCCTCACGGGCTGCCTGCT
GCACTTCCACAGGACGCTGCCCGCCGTGGTTTTCTGGCAGTGGGTCAACCAGTCCTTCAACGCGCTGGTGAATTACACCA
ACCGCAACGCGGCCAGCCCCCTCTCGGGCCGGCAGATGGCGGTGGCCTACGTGACGGCCACCGGGGCCGCCCTGGGCACC
GCCCTGGGCCTGACCCTGGGCACCAAGGGGGCCCCGAAGCTGGTGGCCCGGTGGATCCCCTTCGCGGCCGTGGCCGCCGC
CAACTGCGTGAACATCCCCATGATGAGGCAGCAGGAGCTCCTGCACGGCCTCGTGGTGACGGACGCCGCTTCCCGGGAGC
TGGGCCAGTCCCGCCGGGCCGCGGCCCTGGGCATCTCCCAGGTGGTCGTCTCGCGCATCACCATGGCGGCGCCCGGCATG
ATCCTGCTCCCGATTCTCATGCAGAGGCTGGAGAGGCTGGCCTTCATGAAGAAGATCCGCGTGCTGCACGCCCCCCTGCA
GGTGCTGCTGGCCGGGGCCTTCCTCGTCGTCATGGTGCCCACGGCCTGCGCCCTCTTCCCGCAGAGATGCGAGATGCCCG
TCTCGCGCCTGGAGGAGGAGCTCCAAGCGTCCCTCAGAGCCCAGTACGGAGACATTGCCTTCGTCTACTTCAACAAAGGC
CTCTGA

Alignment

ORF - retro_shar_64 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.86 %
• Parental protein coverage: 99.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEADLSSFNIDTPRWDQGTFMGRLKHFFNITDPRTALVSEQTLDWAKIMVESSRHGAVPPGTSQEQLLYA
          ME.DLSSF.ID.PRWDQ.TF.GRLKHFFNITDPRT..VSEQ.LDWAKIMVE.SR.G.VPPGT..EQLLYA
Retrocopy MESDLSSFDIDAPRWDQATFIGRLKHFFNITDPRTIFVSEQMLDWAKIMVENSRRGTVPPGTDREQLLYA

Parental  KKLYDSAFHPDTGEKMNVIGRMSFQVPGGMAITGCMLQFYRTMPAVVFWQWVNQSFNALVNYTNRNAASP
          KKLYDSAFHPDTGEKMNVIGRMSFQ.PGGMA.TGC.L.F.RT.PAVVFWQWVNQSFNALVNYTNRNAASP
Retrocopy KKLYDSAFHPDTGEKMNVIGRMSFQLPGGMALTGCLLHFHRTLPAVVFWQWVNQSFNALVNYTNRNAASP

Parental  ISVRQMVVSYFTATTAALATALGLNMYTKKAPPLVARWVPFAAVAAANCVNIPMMRQQSRELIHGITVTD
          .S.RQM.V.Y.TAT.AAL.TALGL...TK.AP.LVARW.PFAAVAAANCVNIPMMRQQ..EL.HG..VTD
Retrocopy LSGRQMAVAYVTATGAALGTALGLTLGTKGAPKLVARWIPFAAVAAANCVNIPMMRQQ--ELLHGLVVTD

Parental  RNSQELGRSRKAAAIGISQVVISRITMAAPGMILLPILMERLEKLAFMKKIQFLHAPLQVMLAGGFLVFM
          ..S.ELG.SR.AAA.GISQVV.SRITMAAPGMILLPILM.RLE.LAFMKKI..LHAPLQV.LAG.FLV.M
Retrocopy AASRELGQSRRAAALGISQVVVSRITMAAPGMILLPILMQRLERLAFMKKIRVLHAPLQVLLAGAFLVVM

Parental  VPVACAIFPQRCEMAVSRLEPELRDSLKAKHGDLISFVYFNKGL
          VP.ACA.FPQRCEM.VSRLE.EL..SL.A..GD.I.FVYFNKGL
Retrocopy VPTACALFPQRCEMPVSRLEEELQASLRAQYGD-IAFVYFNKGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sarcophilus harrisii was not studied using RNA-Seq expression data.

ChIP-Seq

Sarcophilus harrisii was not studied using ChIP-Seq data.

EST

Sarcophilus harrisii was not studied using EST data.

TSS

Sarcophilus harrisii was not studied using FANTOM5 data.

Lab

retro_shar_64 was not experimentally validated.

Homology

Retrocopy orthology:

Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Sarcophilus harrisii	ENSSHAG00000018726	1 retrocopy	retro_shar_64 ,