RetrogeneDB ID: | retro_shar_677 | ||
Retrocopy location | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
| Coordinates: | GL856991.1:565590..565984(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ACRC | ||
| Ensembl ID: | ENSSHAG00000009206 | ||
| Aliases: | None | ||
| Description: | acidic repeat containing [Source:HGNC Symbol;Acc:15805] |
Retrocopy-Parental alignment summary:
>retro_shar_677
ATATGTCAAGTGCCTGGTTGTTTCTTGGAGAATCTTTCAGATTGGGAAGCATCTGATTATGGGAAGAACTTCCAGCTAAA
GAAAAAGTTGGCTTAGAAACTCTATAGTTTCTATAACAGCACAGTTTTTGAAAAACGGCTGCCAGAGAAAATGGAAATAA
TCTGGAACAAAAAGATATGTACAACAGCAGGATGCTGTTCTTATTCAGGCAAGGAAGATGGCCTAAAGGGAAGGCAAGGT
CAGAATCAAGCTTTCAGAAAAAGCCTGTGATTTTGCAGACCAGCTCTAGGACACACTGCTCCATGGATTATGCCCTGTGG
CTGTCTGGTTATTTCATGGCATCAGAAGTGGCCTTAGTCCCTCTGTCTATGCCCCAAAACACCCAAAGCTGCCT
ORF - retro_shar_677 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 53.68 % |
| Parental protein coverage: | 71.66 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MCRVAGCFLADLSN-PTCEYVRYFQWKKTELTWKLYHFFNDTIFNKQLPEKMTINWNNKMRTTAGYCHFA |
| .C.V.GCFL..LS......Y...FQ.KK..L..KLY.F.N.T.F.K.LPEKM.I.WN.K..TTAG.C... | |
| Retrocopy | ICQVPGCFLENLSDWEASDYGKNFQLKK-KLA*KLYSFYNSTVFEKRLPEKMEIIWNKKICTTAGCCSYS |
| Parental | GKKGGSQAGRS-VQIELSEKVCDSADRLRDTLIHELCHGATWLFHGIRDCHGPFWRVYAFSPPSLP |
| GK..G...GR..V.I.LSEK.CD.AD.L.DTL.H.LC..A.WLFHGIR....P...VYA...P.LP | |
| Retrocopy | GKEDGLK-GRQ>VRIKLSEKACDFADQL*DTLLHGLCPVAVWLFHGIRSGLSP--SVYAPKHPKLP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_677 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Sarcophilus harrisii | ENSSHAG00000009206 | 1 retrocopy |
retro_shar_677 ,
|