RetrogeneDB ID: retro_shar_749

Retrocopy location

• Organism: Tasmanian devil (Sarcophilus harrisii)
• Coordinates: GL861809.1:281352..281727(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSSHAG00000006978
• Aliases: None
• Description: None

Sequence

>retro_shar_749
TTAGGGATTTTGTTTATTCCCACAGGTCGTATAGCTGCAAGAGTCACCCAGATCCCCAGACACTTGCTCACAAGGAAGAA
CCAGAATGTGACCCTGAGATGTGATCCCATTCCTTCACACACTGCCCTATTCTGGTACCATCAGACTCAAGGTCGAGAGC
TGGAGTTTCTCTTTTACTTGAGGAACAATGAAATGGTGGAGGAGGCAAAGTTATTGTTCTTGAAGGGATATTCAACTAAA
TGGCCCAAACAGTCCTTCTCCAGCCTGAAAATTCACTCCCTGGAGCCAGAGGACTCAGCCTTGTTATTCTGTGCTAGCAG
TTTATACACAGTGTTACAGAGTCATCTCATCTCTGCATGTAAATGTTCATACATT

Alignment

ORF - retro_shar_749 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.25 %
• Parental protein coverage: 94.03 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VAICLIGVGHMDTGVIQHPNFLVKSKKGQNVTLKCDPIPSHTALFWYRQTQSQELEFLFFFQNNAEMLKS
          ..I..I..G.....V.Q.P..L....K.QNVTL.CDPIPSHTALFWY.QTQ..ELEFLF...NN......
Retrocopy LGILFIPTGRIAARVTQIPRHLL-TRKNQNVTLRCDPIPSHTALFWYHQTQGRELEFLFYLRNNEMVEEA

Parental  ELLFAKRYSTKWPKQSFSSLKIHSLESEDSALLFCASSLYTVLQNHLISVCKSSYI
          .LLF.K.YSTKWPKQSFSSLKIHSLE.EDSALLFCASSLYTVLQ.HLIS.CK.SYI
Retrocopy KLLFLKGYSTKWPKQSFSSLKIHSLEPEDSALLFCASSLYTVLQSHLISACKCSYI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sarcophilus harrisii was not studied using RNA-Seq expression data.

ChIP-Seq

Sarcophilus harrisii was not studied using ChIP-Seq data.

EST

Sarcophilus harrisii was not studied using EST data.

TSS

Sarcophilus harrisii was not studied using FANTOM5 data.

Lab

retro_shar_749 was not experimentally validated.

Homology

Retrocopy orthology:

Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Sarcophilus harrisii	ENSSHAG00000006978	1 retrocopy	retro_shar_749 ,