RetrogeneDB ID: | retro_smoe_11 | ||
Retrocopy location | Organism: | Spikemoss (Selaginella moellendorffii) | |
| Coordinates: | GL377573:2862553..2863018(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | SELMODRAFT_74633 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_smoe_11
CTCGGGATCAAAGCCTCGGATGTGTCAAAGGTGATGCCGTTCGTTCTAGAGTCGGGCGTAGAGCCAGTGGACACAATGGT
GGAGTTTCTCCAAGGCGTTGGTGTCAAGTACAACTCCTTGGCTAGAGTGATCGTGGCGTGGCCCAAGATTTTCCACCATC
ACCCCAACGATCTAGCTCCCGCTGTCGTGGTACTCAACCGGCTCGGTTTCACGTCCATGAGCCTCTCGAGTTTGGTGGCG
AGAGCTCCACTGCTGCTCTCGAGAAGCGCGGATGATCTCACTCAGTGTGTCACGTACATGGCGAGCATTGGCTTGTCTCG
CAGAGACACGGAAAGGCTTGTCAACCGGTATCCATCGGTTCTCATGGATGGGGAAAAGCTGAAAAGCCTGGTAACTTATC
TGGAAAGCATTGGAGTTCGGCAAACCAGCATCGGACGGATCATCTCCAGAAAGCTTTCTCTTCTC
ORF - retro_smoe_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.01 % |
| Parental protein coverage: | 62.45 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LGIKASDVSKVMPFVLESGVEPVDTMVEFLQGVGVKYNSLARVIAAWPKIFHHHPNDLAPAVVVLNRLGF |
| LGIKASDVSKVMPFVLESGVEPVDTMVEFLQGVGVKYNSLARVI.AWPKIFHHHPNDLAPAVVVLNRLGF | |
| Retrocopy | LGIKASDVSKVMPFVLESGVEPVDTMVEFLQGVGVKYNSLARVIVAWPKIFHHHPNDLAPAVVVLNRLGF |
| Parental | TSMSLSSLVARAPQLLSRSADDLTQCVTYMASIGLSRRDTERLVNRYPSLMTLHIKDNMIPTVRFLASLG |
| TSMSLSSLVARAP.LLSRSADDLTQCVTYMASIGLSRRDTERLVNRYPS......K.....T...L.S.G | |
| Retrocopy | TSMSLSSLVARAPLLLSRSADDLTQCVTYMASIGLSRRDTERLVNRYPSVLMDGEKLKSLVT--YLESIG |
| Parental | VDVVREIADMVKRLPSLL |
| V.....I.....R..SLL | |
| Retrocopy | VRQT-SIGRIISRKLSLL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Selaginella moellendorffii was not studied using RNA-Seq expression data.
Selaginella moellendorffii was not studied using ChIP-Seq data.
Selaginella moellendorffii was not studied using EST data.
Selaginella moellendorffii was not studied using FANTOM5 data.
retro_smoe_11 was not experimentally validated.
Retrocopy orthology:
Selaginella moellendorffii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Selaginella moellendorffii | SELMODRAFT_74633 | 1 retrocopy |
retro_smoe_11 ,
|