RetrogeneDB ID: retro_smoe_13

Retrocopy location

• Organism: Spikemoss (Selaginella moellendorffii)
• Coordinates: GL377580:2463927..2464230(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: SELMODRAFT_420985
• Aliases: None
• Description: None

Sequence

>retro_smoe_13
CAAAAAAGCCAGCTCTCCTTCAATGAACAAACCTCTCGCTTGGAACTCCTCAACACTTGGCATCGTAACAATGATAAAAG
GTTGGAGAGCAAACTTGAGAATGTGATGAAGGAGAAGCTCTATATCACTTAGAGTATTGCTGCTGCTGAGGAGCTACTTC
AAGTATGGGATACGAAGTTCCTCACTAGTCCCCGCACCGGCATAACACTTCCAGAATATGTTTGAGCTTCCTTTCAAGAG
CTTGGGGATGGATGGCTTCCTGATGGCAGCTCAAGCTCTATGGATTTCAAGAACCAGCCGGGC

Alignment

ORF - retro_smoe_13 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.22 %
• Parental protein coverage: 62.73 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QIEQHILNLRKSREMLLNTWHRNNDKRLESKLENVMKKELYITQRIAAAEELFQVWDTKFLTSACIGITL
          Q..Q...N...SR..LLNTWHRNNDKRLESKLENVMK..LYIT..IAAAEEL.QVWDTKFLTS...GITL
Retrocopy QKSQLSFNEQTSRLELLNTWHRNNDKRLESKLENVMKEKLYIT*SIAAAEELLQVWDTKFLTSPRTGITL

Parental  PEYVQASLQEFGDGWLPDGSSSSMDFKNQLG
          PEYV.AS.QE.GDGWLPDGSSSSMDFKNQ.G
Retrocopy PEYV*ASFQELGDGWLPDGSSSSMDFKNQPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Selaginella moellendorffii was not studied using RNA-Seq expression data.

ChIP-Seq

Selaginella moellendorffii was not studied using ChIP-Seq data.

EST

Selaginella moellendorffii was not studied using EST data.

TSS

Selaginella moellendorffii was not studied using FANTOM5 data.

Lab

retro_smoe_13 was not experimentally validated.

Homology

Retrocopy orthology:

Selaginella moellendorffii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Selaginella moellendorffii	SELMODRAFT_420985	1 retrocopy	retro_smoe_13 ,