>retro_sscr_42
ATGACAATCCTGTATAATAGCAGCCTCCAAAAAGCCACCTTCTTCCTGACGGGCTTCCGAGGTCTGGAAGGTCTCCATGG
ATGGATCTCTCTTCCCTTCTGCTCCATCTATCTGGCAGTTATCGTAGGAAACCTCACCGTCCTCCACGTCATCCGTACCG
ATGTCACCCTCCACGAACCCATGTACTATTTCTTGGCCATGCTGGCCCTCACTGACCTGGGCCTTTGCCTTTCTACACTA
CCCACTGTGATGGGCATCTTCTGGTTTGGTGCCAGAGAAATCGGTATCCCTGCCTGCTTCACTCAGCTCTTCTTCATCCA
CACCTTGTCCCTCGTGGAGTCTTCAGTTCTCTTGTCCATGTCCGTTGACCGCTATGTGGCCATCTGCCACCCACTGCGTT
ACTCCACAGTCTTGACACCTGCGCGTATTGTCAGGATGGGACTGAGCTCGGTGCTTAGAAGTGCATTGCTCATCCTCCCC
CTGCCGTTTCTCCTTAAGCGCTTCCAGTACTGCCGCTCCCATGTGTTGGCCCATGCCTACTGTCTGCACCTGGAGATCAT
GAAGCTGGCCTGCTCTAGCATCACTGTCAATCACATCTACGGGCTCTTTGTTGTGGCCTGCACTGTAGGTGTGGACTCCC
TGCTCATCTTCCTCTCCTACGCCCTCATTCTCCGCACAGTCCTGGGCATTGCCTCCCGCCAGGAGCGCCTCCGCGCCCTC
AGCACCTGTGTCTCCCACATCTGCGCGGTGCTTCTCTTCTACATGCCCATGATTGGCTTGTCGCTTGTGCACCGCTTCGG
TGAACACCTGCCCCGCCTTGTGCACCTCCTCATGTCCTATGTGTATCTGCTGGTCCCCCCGCTCATGAACCCCATTGTTT
ACAGCATCAAGACCAAGCAGATCCGCCAACGCATCGCTAAGAAATTTCAGTTTATAAAATCGCTCAAGTGTTTT
ORF - retro_sscr_42 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.84 % |
Parental protein coverage: |
99.67 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MTILYNSSLQKATFFLTGFRGLEGLHGWISLPFCSIYLAVIVGNLTVLHVIRTDVTLHEPMYYFLAMLAL |
| MTILYNSSLQKATFFLTGFRGLEGLHGWISLPFCSIYLAVIVGNLTVLHVIRTDVTLHEPMYYFLAMLAL |
Retrocopy | MTILYNSSLQKATFFLTGFRGLEGLHGWISLPFCSIYLAVIVGNLTVLHVIRTDVTLHEPMYYFLAMLAL |
|
Parental | TDLGLCLSTLPTVMGIFWFGAREIGIPACFTQLFFIHTLSLVESSVLLSMSVDRYVAICHPLRYSTVLTP |
| TDLGLCLSTLPTVMGIFWFGAREIGIPACFTQLFFIHTLSLVESSVLLSMSVDRYVAICHPLRYSTVLTP |
Retrocopy | TDLGLCLSTLPTVMGIFWFGAREIGIPACFTQLFFIHTLSLVESSVLLSMSVDRYVAICHPLRYSTVLTP |
|
Parental | ARIVRMGLSSVLRSALLILPLPFLLKRFQYCRSHVLAHAYCLHLEIMKLACSSITVNHIYGLFVVACTVG |
| ARIVRMGLSSVLRSALLILPLPFLLKRFQYCRSHVLAHAYCLHLEIMKLACSSITVNHIYGLFVVACTVG |
Retrocopy | ARIVRMGLSSVLRSALLILPLPFLLKRFQYCRSHVLAHAYCLHLEIMKLACSSITVNHIYGLFVVACTVG |
|
Parental | VDLLLILLSYVLILCSVLSIASRTQRLKALNTCVAHICAVLLFYIPMIGLSVIHRFGKQAPHLVQVVMGF |
| VD.LLI.LSY.LIL..VL.IASR..RL.AL.TCV.HICAVLLFY.PMIGLS..HRFG...P.LV...M.. |
Retrocopy | VDSLLIFLSYALILRTVLGIASRQERLRALSTCVSHICAVLLFYMPMIGLSLVHRFGEHLPRLVHLLMSY |
|
Parental | VYL----XMNPIVYSVKTKQIRDRV |
| VYL.....MNPIVYS.KTKQIR.R. |
Retrocopy | VYLLVPPLMNPIVYSIKTKQIRQRI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP014902_placenta |
0 .00 RPM |
0 .00 RPM |
SRP014902_testis |
0 .00 RPM |
0 .00 RPM |
SRP018288_heart |
0 .00 RPM |
0 .00 RPM |
SRP018288_kidney |
0 .00 RPM |
0 .00 RPM |
SRP018288_liver |
0 .00 RPM |
0 .00 RPM |
SRP018288_lung |
0 .00 RPM |
0 .00 RPM |
SRP018856_adipose |
0 .29 RPM |
0 .00 RPM |
SRP035408_brain |
0 .00 RPM |
0 .00 RPM |
SRP035408_liver |
0 .00 RPM |
0 .00 RPM |
Sus scrofa was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_sscr_42 retrocopy.
Sus scrofa was not studied using FANTOM5 data.
retro_sscr_42 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_sscr_42 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.