RetrogeneDB ID: | retro_sscr_422 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:116369766..116370138(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MCFD2 | ||
Ensembl ID: | ENSSSCG00000021325 | ||
Aliases: | None | ||
Description: | multiple coagulation factor deficiency 2 [Source:HGNC Symbol;Acc:18451] |
Percent Identity: | 64.84 % |
Parental protein coverage: | 80.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ARAKEPGASFSHPG-SVGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKM-HDYDGNNLLDGL |
ARAK..GAS.SHP..SVGLDKNT..DQEHI.EH.EG...KPE.E...QELQLHYFKM........LL.GL | |
Retrocopy | ARAKVAGASLSHPA<SVGLDKNTMQDQEHITEHPEGGTDKPEVELFLQELQLHYFKM>NYDSNHHLLGGL |
Parental | ELSTAITHVHKEEGNEQA-PMSEDELINLIDGV---LRDDDKNNDGYIDYAEFAKSLQ |
ELSTAI.HVH.E.GNE...P..EDELINL.DGV...LR..DKNNDGY.....F.KSLQ | |
Retrocopy | ELSTAIAHVHEEKGNEETPPRREDELINLMDGVDGVLRENDKNNDGY--FVVFPKSLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 53 .36 RPM |
SRP014902_testis | 0 .00 RPM | 48 .94 RPM |
SRP018288_heart | 0 .00 RPM | 163 .42 RPM |
SRP018288_kidney | 0 .00 RPM | 137 .51 RPM |
SRP018288_liver | 0 .00 RPM | 180 .86 RPM |
SRP018288_lung | 0 .00 RPM | 90 .12 RPM |
SRP018856_adipose | 0 .00 RPM | 120 .04 RPM |
SRP035408_brain | 0 .00 RPM | 45 .00 RPM |
SRP035408_liver | 0 .00 RPM | 298 .90 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006097 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000032480 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003286 | 6 retrocopies | |
Felis catus | ENSFCAG00000009220 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010002 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012043 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021325 | 2 retrocopies |
retro_sscr_1129, retro_sscr_422 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000003692 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010692 | 1 retrocopy |