>retro_sscr_695
TTTAATGGATTTTTAAAAGACCTCAATGAGGTGAGGATAGGCGTCCTTAAACACTTGCATGGTTTTCTGAAGCTTCTTCC
TATTGACAAAAGAAGACAATATCAGTATCAGGAGTTTGGGGTGACATATAGCCGTCAAAATTGGTGGTTTTGAGCTGAGC
TGGCTGAACGGCTGGTTTACTCCTAGAACTGTACAGCCCCAGAGGTGTCTATGGCTGCTTGTGCTCCACTGTCCTGAGCC
TGTGTGCACATAAAGCATCTTGCATCAGCTGGATTTCCTGCAAGCTGGTCAGCGAGATGGTGCACAAGCATCACCACGCC
ACACCGCCCCCCCTCAGAGTGGGCCTCGTCGTGAGCTGGTGGACATCTTTAGCCGCTGCCCATGCTGGTCAGGGCGCCAG
GCGCTGGTCTTCATCTGCCAGGCTGTCACTGAAGATGACTGCCTTGCCAGAGACCAGTGTGCTCTGCCTCTGATGCCACA
CCCGCTTACCTTGGCCGATGGCAGGATGCCAAATGGATGCGTGCTGCTTGCAAAAACCTTAAGACAGACTCTACTAGAAA
AAGAGTATTTTCTCACCTCTATTCCACAGGAGGCTGTGGAATAGACCATCGCAGCTCTTCAGATGGCTCATGACAGAGAT
GTTAAGTATTTGCTGAGTCTCCAT
ORF - retro_sscr_695 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.67 % |
Parental protein coverage: |
69.59 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | FNGFLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLI-LLLELYSP |
| FNGFLKDL.EVRIGVLKHLH.FLKLL.IDKRR.Y.YQ..EF.VT....NW.F.AELAE.L..LLLELYSP |
Retrocopy | FNGFLKDLNEVRIGVLKHLHGFLKLLPIDKRRQYQYQ--EFGVTYSRQNWWF*AELAERLV<LLLELYSP |
|
Parental | RDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVRKLHQAAPPSFGVDLI-RELVESFGRCX----RQAF |
| R.VY..L....L.LCA.K.S...WIS.KLVSEMV.K.H.A.PP...V.L..RELV..F.RC.....RQA. |
Retrocopy | RGVYGCLCSTVLSLCAHKASCISWISCKLVSEMVHKHHHATPPPLRVGLV<RELVDIFSRCPCWSGRQAL |
|
Parental | VFVCQTVIEDDCLPMDQFALHLMPHLLTLANDRVPNVRVLLAKTLRQTLLEKECFLTSASCHQEAVEQTI |
| VF.CQ.V.EDDCL..DQ.AL.LMPH.LTLA..R.PN..VLLAKTLRQTLLEKE.FLTS....QEAVE.TI |
Retrocopy | VFICQAVTEDDCLARDQCALPLMPHPLTLADGRMPNGCVLLAKTLRQTLLEKEYFLTSIP--QEAVE*TI |
|
Parental | MALQMDRDSDVKYFASIH |
| .ALQM..D.DVKY..S.H |
Retrocopy | AALQMAHDRDVKYLLSLH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP014902_placenta |
0 .00 RPM |
57 .74 RPM |
SRP014902_testis |
0 .00 RPM |
38 .90 RPM |
SRP018288_heart |
0 .00 RPM |
2 .70 RPM |
SRP018288_kidney |
0 .00 RPM |
6 .40 RPM |
SRP018288_liver |
0 .16 RPM |
2 .08 RPM |
SRP018288_lung |
0 .00 RPM |
14 .05 RPM |
SRP018856_adipose |
0 .00 RPM |
6 .49 RPM |
SRP035408_brain |
0 .03 RPM |
1 .91 RPM |
SRP035408_liver |
0 .00 RPM |
1 .14 RPM |
Sus scrofa was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_sscr_695 retrocopy.
Sus scrofa was not studied using FANTOM5 data.
retro_sscr_695 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_sscr_695 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.