RetrogeneDB ID: | retro_sscr_977 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:107029723..107030160(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOH | ||
Ensembl ID: | ENSSSCG00000003849 | ||
Aliases: | None | ||
Description: | mago-nashi homolog, proliferation-associated (Drosophila) [Source:HGNC Symbol;Acc:6815] |
Percent Identity: | 76.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEIT |
.ESDFYL.Y.VGHKGKF.HEFL.FEF.PDGKLRYANN.NYKNDVM.RKEA..HKSVMEELKRIIDDSEIT | |
Retrocopy | VESDFYLCYHVGHKGKFSHEFLYFEF*PDGKLRYANNGNYKNDVMSRKEACIHKSVMEELKRIIDDSEIT |
Parental | KEDDALWPPPDRVGRQELEIVIGDEHISFTT-SKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGL |
KED..L.PPPD..G.QELEI.I..E..S.TT..KIGSLIDVNQ.KDPEGL.VF.YL.Q.LKCL.FSL.GL | |
Retrocopy | KEDGTLRPPPDQGG*QELEIIIAEEYTSLTT<TKIGSLIDVNQFKDPEGLQVFDYLLQELKCLIFSLTGL |
Parental | HFKIKPI |
..KIK.I | |
Retrocopy | YLKIKSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 13 .01 RPM |
SRP014902_testis | 0 .00 RPM | 17 .82 RPM |
SRP018288_heart | 0 .00 RPM | 13 .62 RPM |
SRP018288_kidney | 0 .00 RPM | 20 .98 RPM |
SRP018288_liver | 0 .00 RPM | 9 .91 RPM |
SRP018288_lung | 0 .00 RPM | 42 .87 RPM |
SRP018856_adipose | 0 .00 RPM | 18 .17 RPM |
SRP035408_brain | 0 .00 RPM | 28 .55 RPM |
SRP035408_liver | 0 .00 RPM | 32 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009587 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015908 | 6 retrocopies | |
Felis catus | ENSFCAG00000025232 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012778 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012081 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000000635 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003849 | 3 retrocopies |
retro_sscr_1007, retro_sscr_706, retro_sscr_977 ,
|