RetrogeneDB ID: retro_tbel_2112

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_100687:45471..45861(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IMMP2L
• Ensembl ID: ENSTBEG00000000103
• Aliases: None
• Description: IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:14598]

Sequence

>retro_tbel_2112
CCTTCTTTGAATCCTGGGGGGAGCCAGTCATCTGATATAGTACTCTTGAACCACTGGAAAGTGAGGAACTTTGAAGTACA
ACGTGGTGACATTGTGTCATTGGTGTCTCCAAAAAACCCTGAGCAGAAGATCATTAAGAGAGTGATCGCTCTTGAAGGAG
ATATTGTAAGAACAAGGGGACACAAAAACCGTTATGTCAGAGTCCCCCACGGTCACATCTGGGTTGAAGGTGATCATTAT
GGACACAGTTTTGACAGCAATTCTTTTGGTCCAGTGTCCCTGGGACTTCTGCATGCCCATGCTACACACATTCTGTGGCC
TCCAGAACGGTGGCAGAAATTGGAATCTGTTCTACCTCCAGAGCGTTTGCCAGTTCAGATCGAAAAGGAA

Alignment

ORF - retro_tbel_2112 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.85 %
• Parental protein coverage: 74.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSLNPGGSQSSDVVLLNHWKVRNFEVRRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTMGHKNRYVRVPR
          PSLNPGGSQSSD.VLLNHWKVRNFEV.RGDIVSLVSPKNPEQKIIKRVIALEGDIVRT.GHKNRYVRVP.
Retrocopy PSLNPGGSQSSDIVLLNHWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTRGHKNRYVRVPH

Parental  GHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERFPVQSEEE
          GHIWVEGDH.GHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPER.PVQ.E.E
Retrocopy GHIWVEGDHYGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQIEKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2112 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2112 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000001410	2 retrocopies	retro_etel_1369, retro_etel_2063,
Tupaia belangeri	ENSTBEG00000000103	2 retrocopies	retro_tbel_2112 , retro_tbel_2872,