>retro_tbel_2198
CGTGGGGTGGACTGCTCCGGGAAGGGGCTGATGGCCCTGCCGGAGGGGCTCAACGCCTTCACCCAAGCGCTAAATATCAG
CATAAACAACGTTACTCAATTACCAGAATATGCATTTAAAAAATTTCCTTTCCTAAAAGAATTGGCTGGCAATGACCTTT
CTTCTATCCACCCAAAGGCCTTGTCTGCGTTGAAAAAACTCACCGTTCTAACCCTCCAAAACAATCAGTTAAAAACAGTA
CCCAGTGAAGCCATTGGAGGACTGAGTGCTTTGCAGTCTTTGCATTTAAAATGCCAACCACATCACCTCGGTGTCCGAGG
ACAGTTTCAAAGGGCTCGTTCAGCTGCGCCATCTGTGGCTGGATGACAACAGCCTGACGGAGGTGCCCATGCACCCCCTG
AGCAACCTGCCGACTCTGCAGGCACTGACCTTGGCCCTCAACAAAATCTTGAGCATCCCTGACTTCACATTCACCAACCT
TTCCAGCCTGGTGGTTCTGCATCTTCAAAACAACAAAATTAAAAGACTGGGCCAACACTGTTTTAATAGACTGGATAACT
TAGAAACCTTAGACTTAAATTATAATAATTTAGAAAAATTTCCTCAGGCTATTAAAGCCCTTCCTAGTCTGAAAGAGCTA
GGATTTCACAGTTATTCTATTTCTGTCATCCCTGATAGAACATTTGGTAATAATACACTGTTAAAAACCATACACCTATA
TGACAATCCTCTGTCTTTTGTGGGGAATTCAGCATTTCACAATTTATCTGATCTGCATTCCTTAGTCACTCGGGGTGTGA
GCATGGTGCAGTTGTTCCCCAATCTGACCAAAACTGTCCATCTGGAGAGC
ORF - retro_tbel_2198 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.87 % |
Parental protein coverage: |
53.48 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | RGVKCAEKGLMGVYEGLS-FSPVPDISMNNITQLPEDAFKNFPFLEELQLAGNDLSFIHPKALSGLKELK |
| RGV.C..KGLM...EGL..F.....IS.NN.TQLPE.AFK.FPFL.EL..AGNDLS.IHPKALS.LK.L. |
Retrocopy | RGVDCSGKGLMALPEGLNAFTQALNISINNVTQLPEYAFKKFPFLKEL--AGNDLSSIHPKALSALKKLT |
|
Parental | VLTLQNNQLKTVPSEAIRGLSALQSLRL-DANHITSVPEDSFEGLVQLRHLWLDDNSLTEVPVHPLSNLP |
| VLTLQNNQLKTVPSEAI.GLSALQSL.L..ANHITSV.EDSF.GLVQLRHLWLDDNSLTEVP.HPLSNLP |
Retrocopy | VLTLQNNQLKTVPSEAIGGLSALQSLHL>NANHITSVSEDSFKGLVQLRHLWLDDNSLTEVPMHPLSNLP |
|
Parental | TLQALTLALNKISSIPDFAFTNLSSLVVLHLHNNKIKSLGQHCFDGLDNLETLDLNYNNLGEFPQAIKAL |
| TLQALTLALNKI.SIPDF.FTNLSSLVVLHL.NNKIK.LGQHCF..LDNLETLDLNYNNL..FPQAIKAL |
Retrocopy | TLQALTLALNKILSIPDFTFTNLSSLVVLHLQNNKIKRLGQHCFNRLDNLETLDLNYNNLEKFPQAIKAL |
|
Parental | PSLKELGFHSNSISVIPDGAFGGNPLLRTIHLYDNPLSFVGNSAFHNLSDLHSLVIRGASMVQWFPNLTG |
| PSLKELGFHS.SISVIPD..FG.N.LL.TIHLYDNPLSFVGNSAFHNLSDLHSLV.RG.SMVQ.FPNLT. |
Retrocopy | PSLKELGFHSYSISVIPDRTFGNNTLLKTIHLYDNPLSFVGNSAFHNLSDLHSLVTRGVSMVQLFPNLTK |
|
Parental | TVHLES |
| TVHLES |
Retrocopy | TVHLES |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_2198 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_2198 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.