RetrogeneDB ID: | retro_tbel_2653 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_115459:204..577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTF3C6 | ||
Ensembl ID: | ENSTBEG00000017031 | ||
Aliases: | None | ||
Description: | general transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:HGNC Symbol;Acc:20872] |
Percent Identity: | 83.2 % |
Parental protein coverage: | 55.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAGEKRIW--EDDDE----EEEEEQLVLVEFSGIIDSDFLSKCENKCKILGIDTERPILQVDNYVFAGE |
MAA.EKRIW...DDD.....EEE.EQLVLV.FSGIIDSDFLSKCENKCKILGIDT.RPILQVDNYVFAGE | |
Retrocopy | MAAREKRIWGDDDDDKKWIWEEEKEQLVLVKFSGIIDSDFLSKCENKCKILGIDTKRPILQVDNYVFAGE |
Parental | YEDTLGTCVIFEENVEHVDAEGNNKTVLKYKCHTMKK-LSMTRTLLSEKKEGEEN |
YEDTLGTC.IFEEN.EH.DA.GNNKT.LKYKCHTMK..L.MTRTLL.EKKEGEEN | |
Retrocopy | YEDTLGTCFIFEENIEHGDAGGNNKTALKYKCHTMKN>LDMTRTLLTEKKEGEEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001496 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010681 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017924 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010179 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017031 | 4 retrocopies |