RetrogeneDB ID: | retro_tbel_3001 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_126109:51779..52782(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MFAP1 | ||
Ensembl ID: | ENSTBEG00000005050 | ||
Aliases: | None | ||
Description: | microfibrillar-associated protein 1 [Source:HGNC Symbol;Acc:7032] |
Percent Identity: | 79.35 % |
Parental protein coverage: | 98.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RKIVEPEVVGESDSEVEGDAWRMEREDSSEEEEEEI-DDEEIERRRGMMRQRAQERKNEEMEVMEVEDEG |
.K.VEP.VVGES.SEVEGDAW.MERE..SEEEEEEI.DDE......GMMR..AQERKNEEMEVMEVEDEG | |
Retrocopy | KKVVEPAVVGESGSEVEGDAWCMERENGSEEEEEEIGDDEQRKGCHGMMRP-AQERKNEEMEVMEVEDEG |
Parental | RSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYTLKI |
RSGEESE.E.E.EEYTDSEDEMEPRL.PVFI.KKD.VTVQEREAEALKQ.ELEQEAK.MA.E..KYTL.I | |
Retrocopy | RSGEESELELEHEEYTDSEDEMEPRLTPVFIQKKD*VTVQEREAEALKQ-ELEQEAKHMAGESCKYTLEI |
Parental | VEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEE |
VEEETK.ELEENK.SLAAL.ALNTDDENDEEEYEAWKV.ELK.IKRDRE.REAL.KEKAE.E.MRNL.EE | |
Retrocopy | VEEETKEELEENKWSLAALEALNTDDENDEEEYEAWKVWELKQIKRDREEREALQKEKAETEYMRNLSEE |
Parental | ERRAELRAN-GKVITNKAVKGKYKFLQKYYHRGAFF-MDEDEEVYKRDFSA-PTLEDHFNKTILPKVMQV |
E.RAELRAN..K.IT.KAVKGKYK.LQKYYH...........EVYK.DFSA.P.LEDHF.KTIL.K.MQV | |
Retrocopy | EERAELRAN>AKPITHKAVKGKYKCLQKYYHQSGLL<FMDGDEVYKTDFSA>PILEDHFTKTILSKIMQV |
Parental | KNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQKAAGVRDVFERPSAKKRKTT |
KNFGRSG.TKY.HLVDQDTTS.DSAWGQESAQNTKF.KQKAAG..DVFE.PS.KK.KTT | |
Retrocopy | KNFGRSGSTKYVHLVDQDTTSLDSAWGQESAQNTKFCKQKAAGAQDVFEPPSSKKQKTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000013870 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013000 | 2 retrocopies | |
Mus musculus | ENSMUSG00000048222 | 2 retrocopies | |
Mus musculus | ENSMUSG00000068479 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010206 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015984 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014628 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006967 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005050 | 2 retrocopies |
retro_tbel_3001 , retro_tbel_3246,
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