RetrogeneDB ID: | retro_tbel_3329 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_137565:128568..129109(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LXN | ||
Ensembl ID: | ENSTBEG00000017673 | ||
Aliases: | None | ||
Description: | latexin [Source:HGNC Symbol;Acc:13347] |
Percent Identity: | 82.32 % |
Parental protein coverage: | 81.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KVFLVQTVKQASMEDIPGRGHKYRLKFSVEEIIQKKVTVNCTAEVLYPPVGQATAPEVNFTFEGEIGKNP |
KVFLVQ.VKQAS..DIPGRGH.Y.LK.SVEE.IQ..V.VNC.AEVLYPPVGQATAPEVN.TFEGE.GKNP | |
Retrocopy | KVFLVQMVKQASKGDIPGRGHEYCLKCSVEEMIQQQVMVNCIAEVLYPPVGQATAPEVNLTFEGEMGKNP |
Parental | DEEDNTFYQRLKSMKEPLEAQNIPDSFGNVSPEMKPVRHLAWVACGYIIWQNSTE-NTWYKMAKIQTVKQ |
DEEDNT.YQRLKSMKE.LEAQN.PD.FGN.SPE.KPV..L.W.ACGYIIWQNSTE.NTWYKM.KI.T.KQ | |
Retrocopy | DEEDNTVYQRLKSMKESLEAQNTPDNFGNLSPEIKPVQYLSWIACGYIIWQNSTE>NTWYKMVKIPTIKQ |
Parental | VQRNDDFIELDYTILLHDIASQEIIPWQMQVLWHPQYGTKV |
VQRND.FIELDYTILLHDI.SQEI.PWQMQVL.HPQYGT.V | |
Retrocopy | VQRNDNFIELDYTILLHDITSQEIVPWQMQVLGHPQYGTEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009336 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000009096 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000386 | 1 retrocopy | |
Homo sapiens | ENSG00000079257 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003092 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004963 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004229 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014245 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015571 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013608 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000017673 | 3 retrocopies |
retro_tbel_2746, retro_tbel_3329 , retro_tbel_4516,
|