RetrogeneDB ID: | retro_tbel_3675 | ||
Retrocopy location | Organism: | Treeshrew (Tupaia belangeri) | |
| Coordinates: | scaffold_148225:132..702(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTBEG00000004341 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FBXO45 | ||
| Ensembl ID: | ENSTBEG00000011780 | ||
| Aliases: | None | ||
| Description: | F-box protein 45 [Source:HGNC Symbol;Acc:29148] |
Retrocopy-Parental alignment summary:
>retro_tbel_3675
CTGTCAGAGCTGCGGAGCTGCACCCTGGTGTTCAAGCACTGGAAGCACTGGTACCGCTGCCTGCAAGGTGACAAGAACAG
CGAGGTGTGGCGGAACCTGTGTGCCTGCAGCCTGGCAGAAGAGGATCTGCGCACAGACATCCTCTGCAACCTGCCCAGCT
ACAAGGCCAAGGGACCAGCTTTCCAACAGGCCTTCAGCACTGATGACTGCTCCAGGAATGTCTACATTAAGAATGGCTTC
ACTTTGCATGGAAACGCTATTGCTCAGAGCACTGATGGTGCAAGGACCAAGACTGGTTCCAGTGAGGGTCGCCACGCCTG
GGAAATATGGTGGGAGGGGCCTTTGGGCACTGTGGTGGTGATAGGAATTGCCACAAAACGGGCCCCCGTGCAGTGCCAAG
GTTATGTGGCATTGCTGGGCAGTGATGATCAGAGCTGGGGCTGGAATCTGGTGGACACTAATCTGCTACATAATGGAGAA
GTCCATGGCTGTTTTCCACAGTGCAACAATGCACCAAAATATCAGATTGGCGAAAGAATTGGAGTCACCTTGGACATGGA
GGATAAGACT
ORF - retro_tbel_3675 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.58 % |
| Parental protein coverage: | 80.26 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LSELWCCALVF---KHWYYCLHDNENGEVWWSLCARSLGEEALHTDILCNLPSYKVKVRAFQHAFSTNDC |
| LSEL..C.LVF...KHWY.CL....N.EVW..LCA.SL.EE.L.TDILCNLPSYK.K..AFQ.AFST.DC | |
| Retrocopy | LSELRSCTLVFKHWKHWYRCLQGDKNSEVWRNLCACSLAEEDLRTDILCNLPSYKAKGPAFQQAFSTDDC |
| Parental | SRNVYIKEDCFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEG-LGTVAVIGIATKRAPMQCQGYVALL |
| SRNVYIK...FTLH.N.IAQSTDGARTK.G.SEGRHAWE.WWEG.LGTV.VIGIATKRAP.QCQGYVALL | |
| Retrocopy | SRNVYIKNG-FTLHGNAIAQSTDGARTKTGSSEGRHAWEIWWEGPLGTVVVIGIATKRAPVQCQGYVALL |
| Parental | GSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKT |
| GSDDQSWGWNLVD.NLLHNGEV.G.FPQCNNAPKYQIGERI.V.LDMEDKT | |
| Retrocopy | GSDDQSWGWNLVDTNLLHNGEVHGCFPQCNNAPKYQIGERIGVTLDMEDKT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_3675 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_3675 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tupaia belangeri | ENSTBEG00000011780 | 2 retrocopies |
retro_tbel_2409, retro_tbel_3675 ,
|