>retro_tbel_4345
ATGGCTCTGTATTACGAAGCCTTGTGCAAATCCCTCGACTGGCAGATGAACATGGACCTACTTAATAAAATGAAGGCGAA
TGAAGAAGAGTTGAAACGTTTGGATGAGGACCTGGAAGATGCTGAAAAGAATCTGGGAGAGACTGAAATTGGAGATGCGA
TGATGGCAAAGACCAAGCCCCTCAGTGGGATAGGTGAGAAGGAGGCAGCTCTGACAGCCTTTCGCAAGACATATGACAAA
ACTGAGCCCTGGGTCACCAACTGACTATTGTATTCTATCTCCTTAGAATTGTCTTATTTTATATGGATAATGATCTCATC
ACATGAAACACAGGAAAGGCCCAAAGCTTAATAGAAGGAGGAGACTGGGACAGGAGAAACCACCAAAAGGTGTATCAAGG
TCTGTATTGTGTGGCTCTTCGTGATTTCAAACAGGCAGCTGAACTCTTTCTTGGCACTGTTTCAACATTCACATCCTATG
AACTCATGGATTATAAAATGTTTGTGATTTATGCCATGTACGGCAGCATGATTGTCTAAGAAAGACCAGGGAAAATGTCA
TTAAAGGATTAGAGATTTTTGAAGTGTTGTGCAGTCTTCCAGCGGTTCAGAAGTACTATTTTCACTCTATGAATATGTTA
CTGAGTTTTATTCCAGTCATTGGCCGTCGTGGAACAGGAAATGAAAAAAGGACTGGCTTTTTCTGCCTCACTATCGATAC
TATGTGAGAGAAATGAGAATTCATGCATGCAGCCAGCTGTTGGAATCATACAGGTCATTAACTGGGCAATAT
ORF - retro_tbel_4345 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.28 % |
Parental protein coverage: |
95.39 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MAPYYEALCKSLDWQMDMDLLNKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEG |
| MA.YYEALCKSLDWQM.MDLLNKMK.ANEEELKRLDE.LEDAEKNLGE.EI.DAMMAK...L..IG.KE. |
Retrocopy | MALYYEALCKSLDWQMNMDLLNKMK-ANEEELKRLDEDLEDAEKNLGETEIGDAMMAKTKPLSGIGEKEA |
|
Parental | ALTAFRKTYDKTV-ALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYC |
| ALTAFRKTYDKT..ALGH.L.IVFYLLRI.LFYMDNDLIT.NT.KA.SLIE.GGDWDRRN..KVYQGLYC |
Retrocopy | ALTAFRKTYDKTE<ALGHQLTIVFYLLRIVLFYMDNDLIT*NTGKAQSLIE-GGDWDRRNHQKVYQGLYC |
|
Parental | VAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQ |
| VA.RDFKQAAELFL.TVSTFTSYELMDYK.FV.Y..Y.SMI..ERP.......K....L.........R. |
Retrocopy | VALRDFKQAAELFLGTVSTFTSYELMDYKMFVIYAMYGSMIV*ERPG--KMSLKD*RFLKCCAVFQRFRS |
|
Parental | YLFSLYECRYSVFFQSLAVVEQEM-KKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGY |
| ..F.L..C.Y.V.FQSLAVVEQEM.KKDWLF.PHYRYYVREMRIHA.SQLLESYRSLT..Y |
Retrocopy | TIFTL*IC-Y*VLFQSLAVVEQEM>KKDWLFLPHYRYYVREMRIHACSQLLESYRSLTGQY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_4345 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_4345 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.