RetrogeneDB ID: | retro_tbel_4470 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_84628:1236..1592(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CETN3 | ||
Ensembl ID: | ENSTBEG00000001992 | ||
Aliases: | None | ||
Description: | centrin, EF-hand protein, 3 [Source:HGNC Symbol;Acc:1868] |
Percent Identity: | 91.67 % |
Parental protein coverage: | 71.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | HELKVAMRALGFDVKK-ADVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSG |
HELKVA.RALGFDVKK.A..LKILKDY.REATGKITFE.FNEVVTDWILERD.HEEILKAFKLFDDDDSG | |
Retrocopy | HELKVAVRALGFDVKK<ANILKILKDYNREATGKITFEVFNEVVTDWILERDLHEEILKAFKLFDDDDSG |
Parental | KISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTGD |
KISLRNLR.VARELGENMS.EELR.MIEEFDKDGDGEINQEEFIAIMTGD | |
Retrocopy | KISLRNLRHVARELGENMSNEELRTMIEEFDKDGDGEINQEEFIAIMTGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000007233 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002383 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002381 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006854 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017925 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001992 | 2 retrocopies |
retro_tbel_4470 , retro_tbel_4732,
|