RetrogeneDB ID: retro_tbel_4696

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_97942:36416..37482(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASZ1
• Ensembl ID: ENSTBEG00000010882
• Aliases: None
• Description: ankyrin repeat, SAM and basic leucine zipper domain containing 1 [Source:HGNC Symbol;Acc:1350]

Sequence

>retro_tbel_4696
AAATTAAGAGGACCATTACCTGCTGAAGAAAAGAGTGAGACATTTAAGAGAGCACTGACCACTAGAGATATTTCATTGGT
CAAGAAGCTCCTAGATTCTGGCGTTAGTGTAGATTCCAGCTTTCGATATGGATGGACTCCCCTTATGTATACTGCTAGCG
CTGCCAATGTAGAACTTGTTCGGGTCCTTTTGGACAGAGGTGCTAATGCAAGCTTTGATAAGGATAAGCGAACTATTTTA
TAACTGCACGCTCTGCTCATGGCTCAGAGGAACAGATTTTGAAGTGTGGAGAGGCGTACTATTTTCAAGAAATGCTGACC
CAAATGTCCCTTGAGACTTATAACTCCAATCATGTATGCTGCACGAGATGGCCACCCTCAGGTTGTGGCTCTCCTTGTTG
CTCATGGAGTGGAAATTAATACCCAGGATGAGAATGGCTATACTGCTTTAACATGGGCATCACGTCAAGGTCATAAAAAT
GTAGTTTTGAAGTTGCTGGAACTTGGAGCTAATAAAATGCTACAAACCAAAGATGGAAAGATACCAAGTGAGATTGCAAA
AAGAAATAAACATCTTGAGATCTTCAACTTGCTTTCTTTGACTTTAAATCCAGTAGAAGGAAAGCTTCAATAGCTAACTA
AATAAGAGACTATTTGTAAACTACTAACAACAGATTCTGATAAAGATAAAGATAACATATTTAGCTCATACACAGCATTT
GGAGATCTGGAAATATTTTTACATGGTCTTGGACTTGAACATATGACAGATGTATTAAAGGAAAGGGATATAAACTTTAA
GACACCTGTTGACCATGAAGAAAGATGAGTTTACAAAGAATGGAATTAGTAGGAAAGATCAGCAGAAAATTCTGGCTGCT
CTTAAAGAACTAGAGGTAGAAGAGATAAAATTTGGAGAATTACCTGAAGTGGCAAAGTTGGAAATCAATGGTGATGAGTT
CCTCAACTTTCTTCTAAAATTAAACAAACAATGTGGCCACTTAATAACAGCTGTACAGAATATCATTGCTGAGTTACCTG
TAAATTCTCACAAGATAGTACTAGAA

Alignment

ORF - retro_tbel_4696 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.53 %
• Parental protein coverage: 80.87 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KLRGPLPAEEKSETFKRALTTGDISLVKELLDSGISVDSSFRYGWTPLMYTASVANVELVRVLLDKGANA
          KLRGPLPAEEKSETFKRALTT.DISLVK.LLDSG.SVDSSFRYGWTPLMYTAS.ANVELVRVLLD.GANA
Retrocopy KLRGPLPAEEKSETFKRALTTRDISLVKKLLDSGVSVDSSFRYGWTPLMYTASAANVELVRVLLDRGANA

Parental  SFDKDKQTIL-ITACSARGSEEQILKCVEL-LLSRNADPNVPCRRLMTPIMYAARDGHPQVVALLVAHGA
          SFDKDK.TIL.ITA.SA.GSEEQILKC.E.........P..P..RL.TPIMYAARDGHPQVVALLVAHG.
Retrocopy SFDKDKRTIL<ITARSAHGSEEQILKCGEA>TIFKKC*PKCPL-RLITPIMYAARDGHPQVVALLVAHGV

Parental  EINTQDENGYTALTWASRQGHKNVVLKLLELGANKMLQTKDGKTPSEIAKRNKHLEIFNLLSLTLNPVEG
          EINTQDENGYTALTWASRQGHKNVVLKLLELGANKMLQTKDGK.PSEIAKRNKHLEIFNLLSLTLNPVEG
Retrocopy EINTQDENGYTALTWASRQGHKNVVLKLLELGANKMLQTKDGKIPSEIAKRNKHLEIFNLLSLTLNPVEG

Parental  KLQQLTKEETICKLLTTDSDKDKDNIFSSYTAFGDLEIFLHGLGLEHMTDVLKERDI-TLRHLLTMRKDE
          KLQ.LTK.ETICKLLTTDSDKDKDNIFSSYTAFGDLEIFLHGLGLEHMTDVLKERDI.TLRHLLTM.KDE
Retrocopy KLQ*LTK*ETICKLLTTDSDKDKDNIFSSYTAFGDLEIFLHGLGLEHMTDVLKERDI>TLRHLLTMKKDE

Parental  FIKNGISSKDQQKILAALKELEVEEIKFGELPEVAKLEISGDEFLN-LLKLNKQCGHLITAVQNIIAELP
          F.KNGIS.KDQQKILAALKELEVEEIKFGELPEVAKLEI.GDEFLN.LLKLNKQCGHLITAVQNIIAELP
Retrocopy FTKNGISRKDQQKILAALKELEVEEIKFGELPEVAKLEINGDEFLNFLLKLNKQCGHLITAVQNIIAELP

Parental  VNSHKIVLE
          VNSHKIVLE
Retrocopy VNSHKIVLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_4696 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_4696 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000010882	4 retrocopies	retro_tbel_2141, retro_tbel_3136, retro_tbel_4013, retro_tbel_4696 ,