RetrogeneDB ID: | retro_tbel_4713 | ||
Retrocopy location | Organism: | Treeshrew (Tupaia belangeri) | |
| Coordinates: | scaffold_98565:40574..41196(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTBEG00000010917 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | COQ6 | ||
| Ensembl ID: | ENSTBEG00000008327 | ||
| Aliases: | None | ||
| Description: | coenzyme Q6 monooxygenase [Source:HGNC Symbol;Acc:20233] |
Retrocopy-Parental alignment summary:
>retro_tbel_4713
CTCTCAGAAACCCTGAGTTCCTTGGGTTTGGTCCACATCCCATGAACACATAGCAGAGCTGGTCAGCATGGGTGAGGAAC
AGTTCGTGGATGCCATTAACTCTGCCTTTTGGAGTGATGTTAACCACATGGACTTCATTGACTCAGCTGGCACCATGTTG
CGATATGCTGTTGCACTTCTGAAGCCCACTAAGATCTCAGCTCACCAACTGTCTCCAAGTGTAGCCAGCGTGGATGCCAA
AAGCCAAATGCTGTTTGCTCTGGAGTTGGGACATGCTGCCAAGTATGTCCAGCCTTGGGTGGCACTCACTGGGCATGCAG
ACTACAGAGTCCATCCACTTGCTGGACAAGGTGTCAACATGGGCTTTGGGGATGTCTCCAGCTTGGCCCATCACCTCAGT
ACTACAGCCTTTAATGGGAAAGACTTAGGATCCTTGAGCCATGTCACAGGTTCTGAAACAGATAGACAGTGTCACAACAC
TGCTCTCCTGGCTGCCACGAACTTCCTGAAAAGGCAGTATTCCACCAGTGCCACTCCACTTATTCTACTTAGGACTGGGG
GCTTGCAGGCCACAAATGCAGCTTCTCCACTCAAAGAACAAATTATGGCTTTTGCAAGCAAA
ORF - retro_tbel_4713 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.54 % |
| Parental protein coverage: | 57.34 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LSDTLSSL-VWSTSHEHAAELVSMGEEEFVDAINSAFWSDVNHTDFIDSAGTMLRYAVALLKPTKISARQ |
| LS.TLSSL.VWSTSHEH.AELVSMGEE.FVDAINSAFWSDVNH.DFIDSAGTMLRYAVALLKPTKISA.Q | |
| Retrocopy | LSETLSSL>VWSTSHEHIAELVSMGEEQFVDAINSAFWSDVNHMDFIDSAGTMLRYAVALLKPTKISAHQ |
| Parental | LPPSVASVDAKSRMLFPLGLGHAAEYVRPRVALIGDAAHRVHPLAGQGVNMGFGDVSSLAHHLSTAAFNG |
| L.PSVASVDAKS.MLF.L.LGHAA.YV.P.VAL.G.A..RVHPLAGQGVNMGFGDVSSLAHHLST.AFNG | |
| Retrocopy | LSPSVASVDAKSQMLFALELGHAAKYVQPWVALTGHADYRVHPLAGQGVNMGFGDVSSLAHHLSTTAFNG |
| Parental | KDLGSMSHLTGYETDRQRHNTVLLAATDFLKRLYSTSATPLVLLRTWGLQATNAVSPLKEQIMAFASK |
| KDLGS.SH.TG.ETDRQ.HNT.LLAAT.FLKR.YSTSATPL.LLRT.GLQATNA.SPLKEQIMAFASK | |
| Retrocopy | KDLGSLSHVTGSETDRQCHNTALLAATNFLKRQYSTSATPLILLRTGGLQATNAASPLKEQIMAFASK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_4713 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_4713 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Erinaceus europaeus | ENSEEUG00000000826 | 1 retrocopy | |
| Tupaia belangeri | ENSTBEG00000008327 | 3 retrocopies |
retro_tbel_2585, retro_tbel_3750, retro_tbel_4713 ,
|