RetrogeneDB ID: retro_tbel_490

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_2224:126781..127168(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTBEG00000017150
• Aliases: None
• Description: None

Sequence

>retro_tbel_490
ACTGCTCTGCATCTGGCCTGTGCCAGTGGCCATGAAGAAGTGGTGACTCTGTTAGCAGAAAGAAAATGTGAACTTGACAT
TTGTGATGGTCGAGACAAGACAGCATTGATAATGGCTGTGCAATGCCAACATGAGAAATGTGCAAATATTCTGCTGGAAC
ATGGTGCTGATCCAAAAGCTGCAGATGCCAAGGGCTACACTGCTCTTCATTATGCTGCTCATCATGGCATGATATCGATG
GCAGAGAAGCTGCTTTCACTCCATGTGCATGTTGATGTCAGAAGCGAGGCAAAAATGACACCACTTCTGTGTGCTATAAA
TGCAGACAAGCCACAAATGGTGGAATTTTTATTAAATAAAAATGCAAATGTATATGCTGTTGATGAA

Alignment

ORF - retro_tbel_490 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.62 %
• Parental protein coverage: 53.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TALHLACASGRQEVVTLLAERKCELDIRDGRGKTALIMAVQCQKEKCANILLEHGADPKAADVNGNTALY
          TALHLACASG..EVVTLLAERKCELDI.DGR.KTALIMAVQCQ.EKCANILLEHGADPKAAD..G.TAL.
Retrocopy TALHLACASGHEEVVTLLAERKCELDICDGRDKTALIMAVQCQHEKCANILLEHGADPKAADAKGYTALH

Parental  YTAHHGMIPIAEKLLSLNVNVDVKSKHEMTPLLIAVNADEQRMVEFLLNKKANIYAVDE
          Y.AHHGMI..AEKLLSL.V.VDV.S...MTPLL.A.NAD...MVEFLLNK.AN.YAVDE
Retrocopy YAAHHGMISMAEKLLSLHVHVDVRSEAKMTPLLCAINADKPQMVEFLLNKNANVYAVDE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_490 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_490 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008211	2 retrocopies	retro_cjac_2331, retro_cjac_2672,
Microcebus murinus	ENSMICG00000017899	2 retrocopies	retro_mmur_1151, retro_mmur_246,
Macaca mulatta	ENSMMUG00000008983	1 retrocopy	retro_mmul_1761,
Nomascus leucogenys	ENSNLEG00000016858	1 retrocopy	retro_nleu_2713,
Otolemur garnettii	ENSOGAG00000016865	1 retrocopy	retro_ogar_2721,
Pongo abelii	ENSPPYG00000019046	1 retrocopy	retro_pabe_1037,
Tupaia belangeri	ENSTBEG00000017150	1 retrocopy	retro_tbel_490 ,