RetrogeneDB ID: | retro_tgut_17 | ||
Retrocopy location | Organism: | Zebrafinch (Taeniopygia guttata) | |
| Coordinates: | 1A:59714115..59715084(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTGUG00000011719 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSTGUG00000001947 | ||
| Aliases: | None | ||
| Description: | zinc finger protein 183-like (RNF113A2), mRNA [Source:RefSeq mRNA;Acc:NM_001245166] |
Retrocopy-Parental alignment summary:
>retro_tgut_17
ATGACGGAGGAGAGCAGTGTCTGCAGCTTTGTGTTCAAGAAGCGGGTGCGAGCTGCAGGCAGCAGCCGGCGGAAATGGCC
TGGCAGTGAGCAGGAGCAGGACAGCAGTGGGGAAGAGGGCAGCACCGTGGTGCGCAAGAAGTTGCCCAGGGACACCCCCA
ACTCCATGATCCAGAAGACTAGGTGCTGCATGAGGGAGAGGCTGGAGTATGCGCCAAGCAGCAGCGAGGATGAGGATCCT
GCCAAGGAAATCGGGGTCACCTACAAATCAACCAGGTCGGCAAAACCTGTTGGCCCAGAAGACATGGGGGCCACAGCAGT
GTATGAACTGGACACGGAGAAGGATGCCCAGGCTATCTTTGAGCGCAGCCAAAAAATCCAGGAGAAGCTGAGAGGAAAGG
AAGATGATAAAATTTATCATGGCATTAATAACTACCAGAAGTATGTGAAGCCCAAGGACACATCGATGGGAAATGCCTCC
TCAGGAATGGTCAGAAAAGGCCCCATGCGTGCTCCGGAGCACTTGCAGGCCACAGTGCGCTGGGACTACCAGCCTGACAT
CTGCAAGGACTACAAAGAGACTGGATTCTGTGGCTTTGGGGATAGCTGCAAATTCCTGCACGACCGCTCGGACTACAAGC
ACGGCTGGCAGATTGAACGGGAGCTGGACGAGGGCCGCTACGGCGTCAATGACAGTGGAAACTATGAGGTGAGCAGTGAT
GAGGAGGACATGCCTTTCAAATGCTTCATCTGCAGAGGTTCCTTCCAGAACCCTGTGGTCACCAAGTGTCGGCACTACTT
CTGTGAGAGCTGTGCCCTACAGCACTACCGCAAATCCCAGCGCTGTTATGTCTGTGAGAAGCAAATCAACGGGGTCTTCA
ACCCTGCAAAAGACCTCATGGCAAAATTGGAAAAACACAAAGGGGAGGAAGAAGAGGGGCAACAGTCATGCCATGAAGAG
GATCCAAAG
ORF - retro_tgut_17 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.85 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAEESGVCSFVFKKRVRAAGSGRRKRPASDQERESSGEEGSTVVRKERRRDTPNPMIQKTRRCTRERPEY |
| M.EES.VCSFVFKKRVRAAGS.RRK.P.S.QE..SSGEEGSTVVRK...RDTPN.MIQKTR.C.RER.EY | |
| Retrocopy | MTEESSVCSFVFKKRVRAAGSSRRKWPGSEQEQDSSGEEGSTVVRKKLPRDTPNSMIQKTRCCMRERLEY |
| Parental | APSSSEDEDPAKEIGVTYKSTRSAKPVGPEDMGATAVYELDTEKEKDAQAIFERCQKIQEELRGKEDDKI |
| APSSSEDEDPAKEIGVTYKSTRSAKPVGPEDMGATAVYELDTEK..DAQAIFER.QKIQE.LRGKEDDKI | |
| Retrocopy | APSSSEDEDPAKEIGVTYKSTRSAKPVGPEDMGATAVYELDTEK--DAQAIFERSQKIQEKLRGKEDDKI |
| Parental | YRGINNYQKYVKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHD |
| Y.GINNYQKYVKPKDTSMGNASSGMVRKGP.RAPEHL.ATVRWDYQPDICKDYKETGFCGFGDSCKFLHD | |
| Retrocopy | YHGINNYQKYVKPKDTSMGNASSGMVRKGPMRAPEHLQATVRWDYQPDICKDYKETGFCGFGDSCKFLHD |
| Parental | RSDYKHGWQIERELDEGRYGVNDDENYEVSSDEEDMPFKCFICRGSFKNPVVTKCRHYFCESCALQHYRK |
| RSDYKHGWQIERELDEGRYGVND..NYEVSSDEEDMPFKCFICRGSF.NPVVTKCRHYFCESCALQHYRK | |
| Retrocopy | RSDYKHGWQIERELDEGRYGVNDSGNYEVSSDEEDMPFKCFICRGSFQNPVVTKCRHYFCESCALQHYRK |
| Parental | SQRCYVCDKQTNGVFNPAKELMAKLEKHKGEEEEEQRSDQEEDPQ |
| SQRCYVC.KQ.NGVFNPAK.LMAKLEKHKGEEEE.Q.S..EEDP. | |
| Retrocopy | SQRCYVCEKQINGVFNPAKDLMAKLEKHKGEEEEGQQSCHEEDPK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Taeniopygia guttata was not studied using RNA-Seq expression data.
Taeniopygia guttata was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tgut_17 retrocopy.
Taeniopygia guttata was not studied using FANTOM5 data.
retro_tgut_17 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tgut_17 has 0 orthologous retrocopies within neognath group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000012485 | 1 retrocopy | |
| Taeniopygia guttata | ENSTGUG00000001947 | 1 retrocopy |
retro_tgut_17 ,
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