RetrogeneDB ID: retro_tsyr_1110

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_30872:17751..18257(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000001986
• Aliases: None
• Description: None

Sequence

>retro_tsyr_1110
GAGCGGGAAATTGTGCTGACATCAAGGGTAAACTGTGCTACGTCGCCCTGGACTTCGAGTAGGAGATGGCCACTGCTGCG
TCCTCCTCCTCCCTGGAGAAGAGCTACAAGCTGTCCAACGGCCAGGTGATCACCATCAGCAACGAGTGGTTCCACTGCCC
CGAGACTCTCTTTCAGCCTTCCTTCCTGGACATGGAATCCTGCCGCATCTACGAAACCACCTTCAACTCCATCATGAAGT
GTGATGTGGATATCCGCAAGGACCTGTACACCAACACAGTGCTGTCCAGCGGTACCACCATGTGCCCAGGGATCACCGAC
AGAATGCGGGAGATCACTGCCCTGGCACCCAGACCGATGATCAAAATCATTGCACACCCTGAGCACAAATACTCTGTGTG
GATTGGCGGCTTCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGTTCAGCC
CCTCCACCGTGCACCGCAAGTGCTTC

Alignment

ORF - retro_tsyr_1110 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.14 %
• Parental protein coverage: 90. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EREIV-RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCG
          EREIV..DIK.KLCYVALDFE.EMATAASSSSLEKSY.L..GQVITI.NE.F.CPE.LFQPSFL.MESC.
Retrocopy EREIV<ADIKGKLCYVALDFE*EMATAASSSSLEKSYKLSNGQVITISNEWFHCPETLFQPSFLDMESCR

Parental  IHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG
          I.ETTFNSIMKCDVDIRKDLY.NTVLS.GTTM.PGI.DRM..EITALAP..M.IKIIA.PE.KYSVWIGG
Retrocopy IYETTFNSIMKCDVDIRKDLYTNTVLSSGTTMCPGITDRM-REITALAPRPM-IKIIAHPEHKYSVWIGG

Parental  SILASLSTFQQMWISKQEYDESGPSIVHRKCF
          .ILASLSTFQQMWISKQEYDE..PS.VHRKCF
Retrocopy FILASLSTFQQMWISKQEYDEFSPSTVHRKCF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1110 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000001986	5 retrocopies	retro_tsyr_1110 , retro_tsyr_255, retro_tsyr_279, retro_tsyr_700, retro_tsyr_844,