RetrogeneDB ID: retro_tsyr_1127

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_315887:236..1361(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKRD6
• Ensembl ID: ENSTSYG00000014616
• Aliases: None
• Description: ankyrin repeat domain 6 [Source:HGNC Symbol;Acc:17280]

Sequence

>retro_tsyr_1127
GGGGACCAGACTGCCTTGCACCAGGCCACGATGGTGGGGAACGCGGAGATCATTGCAGTGCTCATCCAGGAAGGGTGTGC
CCTGGACAGACAAGACAAGGACGGGAACACAGCTTTGCATGAAGCATCCTGGCATGGCTTCAGCCAGTCAGCCAAGCTGC
TCGTCAAAGCAGGTGCCAACGTGCTTGTCAGGAACAAGGCAGGGAATACGGCCCTGCACCTGGCCTGCCAGAATAGCCAC
TCCCAGAGCACATGTTTCCTCCTGCTGGACGGGTCCTGCATCGACCTCAAAAACAATGTGGGCGACACCTGTTTGCACGT
TGCTGTGCACTATAACCACTTGCCCATCATTAGGCTGCTCCTCAGTGCTTTCCGTTCTGTCCATGAAAAGAACCAGGCTG
GAGACACAGCACTGCACATTGCTGCTGCCCTAAACCACAAGAAGGTGGTTAAAATCTCACTGGAAGCTGGAGCGGATGCA
ACCATTGTGAATAATGCAGGCCAGACTCTGCTAGAGACGGCCCGCTACCACAACAACCTGGAGGTTGCTCTTCTCACCAA
AGCTCCCCAGGTCTTGCACTTCAGTCCTGGGGGAAGCCTGAGGAAAAAGAAGAGGCTCAAGGAGGAGCGGAAGGCCCAGT
TGGTGCCAAGAGATGAGGTGGCACAAAGCAAGAGCAGTGTCTCGGCAGGAGACACCCCCAGCAGGGAACCGGCTGTGCTC
AGAGAAGAAGAGGCCAGAGATTTCCTGTCAGCCTCCCCAGAGCCCAGAGCCAAGGAGAGCAGGAGGAGAAAGTCAAGGCC
CAAGGTGTCAGCAGTTTCTGACCCCACCCCGCCAGCCGACCAACAGCCTGGACGCCAGAAGAACCTGCACGCTCATCACC
ACCGCTGCTCATCCCCGCCCCCGCCCCACGAGTTCAGAGCTTACTGGCTCTGCACGCTGTACCGGGACAAGGACGGGAAG
GTGATGCAGGCACCAATAAACGGCTGTTGATGTGAGCCTCTGGTCAACAAGCGAGAGAACCTGCTGGAGGCTGCTGTGGA
GGACGACAGAGCAGAGCTGGGGTCGGTCCAGGTCAAGATGAACACAAAGTTGGGCCACATGGAGAGCAAGACCCAGCACC
AGATG

Alignment

ORF - retro_tsyr_1127 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.22 %
• Parental protein coverage: 62.96 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GGQTALHRATVAGNTEVIAALVQEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLARNKAGNT
          G.QTALH.AT..GN.E.IA.L.QEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVL.RNKAGNT
Retrocopy GDQTALHQATMVGNAEIIAVLIQEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLVRNKAGNT

Parental  ALHLACQNSHSQSTRVLLLGGSRADLKNNVGDTCLHVAARYNHLPVVRLLLSAFCSVHEKNQ-GDTALHI
          ALHLACQNSHSQST..LLL.GS..DLKNNVGDTCLHVA..YNHLP..RLLLSAF.SVHEKNQ.GDTALHI
Retrocopy ALHLACQNSHSQSTCFLLLDGSCIDLKNNVGDTCLHVAVHYNHLPIIRLLLSAFRSVHEKNQAGDTALHI

Parental  AAALNHKKVVKISLEAGADATIVNNAGQTLLETARYHNNLEVALLTKAPQVLRFSPWGNLRKKRERLKEE
          AAALNHKKVVKISLEAGADATIVNNAGQTLLETARYHNNLEVALLTKAPQVL.FSP.G.LRKK..RLKEE
Retrocopy AAALNHKKVVKISLEAGADATIVNNAGQTLLETARYHNNLEVALLTKAPQVLHFSPGGSLRKKK-RLKEE

Parental  RKAQLVPRDEVAQSKSSVSARDTPSREQAVLR-EEARDFLSASPEPRAKESRRRKSRSKVSAVSDPTPPA
          RKAQLVPRDEVAQSKSSVSA.DTPSRE.AVLR.EEARDFLSASPEPRAKESRRRKSR.KVSAVSDPTPPA
Retrocopy RKAQLVPRDEVAQSKSSVSAGDTPSREPAVLREEEARDFLSASPEPRAKESRRRKSRPKVSAVSDPTPPA

Parental  DQQPGRQKNLHAHDHRCSSPPPPHEFRAYWLCTLYRGKDGKVMKAPINGCRCEPLVNKRENLLEAAVEDD
          DQQPGRQKNLHAH.HRCSSPPPPHEFRAYWLCTLYR.KDGKVM.APINGC.CEPLVNKRENLLEAAVEDD
Retrocopy DQQPGRQKNLHAHHHRCSSPPPPHEFRAYWLCTLYRDKDGKVMQAPINGC*CEPLVNKRENLLEAAVEDD

Parental  RAELGSVQVKMNTKLGHMESKTQHQM
          RAELGSVQVKMNTKLGHMESKTQHQM
Retrocopy RAELGSVQVKMNTKLGHMESKTQHQM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1127 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000014616	3 retrocopies	retro_tsyr_1127 , retro_tsyr_1954, retro_tsyr_2165,