RetrogeneDB ID: | retro_tsyr_1172 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_333945:609..1286(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTG3 | ||
Ensembl ID: | ENSTSYG00000006151 | ||
Aliases: | None | ||
Description: | BTG family, member 3 [Source:HGNC Symbol;Acc:1132] |
Percent Identity: | 88.6 % |
Parental protein coverage: | 90.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDP |
MKNE.AA.VFFFTRLVRKHDKLKKEA.ER.AEKLTLILQEKYKNHWYPEK.SKGQAYRCI.VNKFQRVDP | |
Retrocopy | MKNETAAIVFFFTRLVRKHDKLKKEAIERSAEKLTLILQEKYKNHWYPEKSSKGQAYRCIPVNKFQRVDP |
Parental | D-VLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENEDENKDEISKKVTRALDKVT |
D..LKACENSCILYSDLGL.KELTL.VDPCE.CCR.GEKNNAFIVASFENEDENKDEISKKVTRALDKVT | |
Retrocopy | D<LLKACENSCILYSDLGLSKELTL*VDPCEMCCRCGEKNNAFIVASFENEDENKDEISKKVTRALDKVT |
Parental | YDYHSGSSSSDEETSKDVEVKPSSVIATPSPVYQISELIYPPLPMWHPLPRKKPGMYRGNGHQNHYPPPV |
.DYHSG.S..DEETSK.VEVKP..V.ATPSPVYQISELIYPPLP.WHPL.RK.PGMYRGNGHQNHYPPPV | |
Retrocopy | SDYHSGTSL-DEETSKEVEVKPNLVTATPSPVYQISELIYPPLPVWHPLSRKQPGMYRGNGHQNHYPPPV |
Parental | PFGYPNQGRKNKPYRPVP |
PFGYPNQ.RKNKPY..VP | |
Retrocopy | PFGYPNQERKNKPYLQVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003406 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012987 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002116 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010746 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022863 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013303 | 8 retrocopies | |
Ochotona princeps | ENSOPRG00000012837 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010285 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006151 | 5 retrocopies |