>retro_tsyr_1185
ATGAGTTGGCATGGAAGATCCACATATAGGCATGGAAGAAGAAATATGACAGAAGTTTTTCATCTGGCTGGGCCTGTGGC
TGCTTAGCAGCCCAGTGATGAAGAGCCTCAGTGAGAGGAGTCACCACCTGCAAGTCAGGATGTTACACCTGGTCAGGAGA
GAGATGAGAAAGCATCTGAGATTCAAGGGCGTGACCCAAAAGCTGCTCCCCACGAACTGTCTCAGCTAAAGACGGGCAGT
ACATGTGAAAATGAATCAGAGATCAGGGGGTCGACTCTAATAAATCTAGAGCCCTTAAAAATGCTAGAAGCAGGTGAAGA
ACAA
ORF - retro_tsyr_1185 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.72 % |
Parental protein coverage: |
96.36 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSWRGRSTYRPRRRNVMDVSQQTEPQV--QPSDEQPSGQEPPPASQDVTPGQEREDAKASEIPGPDPEAV |
| MSW.GRSTYR..RRN...V.....P....QPSDE.P...E.PPASQDVTPGQER.D.KASEI.G.DP.A. |
Retrocopy | MSWHGRSTYRHGRRNMTEVFHLAGPVAA*QPSDEEPQ*EESPPASQDVTPGQER-DEKASEIQGRDPKAA |
|
Parental | PQELSQPVSRGTSGNGSDDQG-TLTNLEPTKMPEASGGQ |
| P.ELSQ.....T..N.S...G.TL.NLEP.KM.EA...Q |
Retrocopy | PHELSQLKTGSTCENESEIRGSTLINLEPLKMLEAGEEQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1185 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
4 retrocopies.