RetrogeneDB ID: | retro_tsyr_1717 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_555339:396..890(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRADC1 | ||
Ensembl ID: | ENSTSYG00000003210 | ||
Aliases: | None | ||
Description: | protease-associated domain containing 1 [Source:HGNC Symbol;Acc:16047] |
Percent Identity: | 82.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | FRIHDYLYFQVLSPGDIRYIFTATPAKDFGGIFHTRYEQIHLVPAEPPEACGELSNGFFIQDQIALVER- |
F.IHDYL.FQVLSPGD.R.I.TATPAKDFGGIFHTRYEQIHLVP.EP.EA.GELSN.FFIQD.IA.VER. | |
Retrocopy | FSIHDYLDFQVLSPGDLRFILTATPAKDFGGIFHTRYEQIHLVPSEPLEAFGELSNCFFIQD*IAMVERE |
Parental | GGCSFLSKTRVVQEHGGR-AVIISDNAVDNDSFYVEMIQDSTQRTADI-PALFLLGRD-GYMI-RRSLEQ |
GGCSFLSKT..VQE.G...AVIISDN..DNDSFY..MIQDSTQ.TA.I.PALFLLGR..GYMI.R.SLEQ | |
Retrocopy | GGCSFLSKTQEVQEYGVG<AVIISDNVADNDSFYMDMIQDSTQCTANI<PALFLLGRE<GYMI<RHSLEQ |
Parental | HGLPWAIISIPVNVTSIPTFELLQPPWTFW |
HGLPWAIISIPVNVTSIPTFELLQPPWTFW | |
Retrocopy | HGLPWAIISIPVNVTSIPTFELLQPPWTFW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000135617 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007761 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012059 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003050 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003210 | 1 retrocopy |
retro_tsyr_1717 ,
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