>retro_tsyr_189
ATGCTCCAAGGCCACAGCTCCATGTTCCAGCCCTTGCTGGGGACCTTCTTCACCTGGGGGATGACAGCTGCGGGGCAGCA
CTTGTGTTCATATTCTCTAGTGGACAGAGGCGGATCTTAGATGGAAGCCTTGGCTTTGCTGCAGGGGTTATGTTGGCAGC
TTCCTACTGGTCTCTCCTGGCCCCAGAGGTTGAGATGGCCGTGTCCGCCGGTGGCTTAGGTGCCTTTGCCTTCTTCCCAG
TAACTGTTGGCTTCACCCTCAGAGCTGTTTTTGTCTACTTGGCTGACCTCCTGATGCCTCACCTGGGTGCGGTACAAGAC
CCGCCCACCCCCCCTGAAATGGCCCTGGCACTGAATTTCGACCCTGCATTGATGAAGAAGTCTGATCCAGAGCGTCCCAT
GCTGCTCTTCTCTGAGAGTGAACTTTCCATCCGGATAGATAGAATGGGGCTTCTTTCAGACAAGAGTGAGAATGGTGAGG
CCTATCAGAGGAAGAAGGCGTCGGCCACTGGTCTTCCAAAGGGTCCTGCTCCCCCCATGCCTTCTCGAGGGAACCCGGCA
CAGCACGGCAGCAGCAGCTGGAGAAGGATTGTGCTGCTCATCTTGGCCATCACTGTACACAGTGTTCCAGAGGGTCTGGC
TGTTGGAGTTGGATTCAGGGCTGTGGAGAAGGCGGGTGTCAGCCACCTTTGAGAATGCCAGGAATCTGGCCATCAGAATT
GGGATCCGGAATTTCCCTGAGGGCCTGGCTGACAGCCTCCCCTTGTGAGGAGGGGCCGGCTTCTCCACCTGGAGAGCCTT
CTGGTACGGGCAGCTAAGCGGCATGGTGGAGCCCCTGGCTGGGGTCTTTGGTGCCTTTGCTGTGGTGCTGGCTGAGCTCA
TCTTGCCCTGTGCTCTGGCCTTTGCTGCTGGCTTCATGGTCTACGTGGTCGTGGATGACATCATCCCCAAAGCCCAGATC
AGTGGTAATGGGAAACTGGCGTCCTGGGCCTCCATCCTGGGATTTGCAGTGATGATGTCACTGGACATTGGCCTGGGC
ORF - retro_tsyr_189 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.92 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MLQGHSSVFQALLGTFFTWGMTAAG-AALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAPAVEMAMS |
| MLQGHSS.FQ.LLGTFFTWGMTAAG.AALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAP.VEMA.S |
Retrocopy | MLQGHSSMFQPLLGTFFTWGMTAAG<AALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAPEVEMAVS |
|
Parental | SGGFGAFAFFPVAVGFTLGAAFVYLADLLMSHLGAAED----PQMALALSFDPALMKKSDPEGPTLLFSE |
| .GG.GAFAFFPV.VGFTL.A.FVYLADLLM.HLGA..D....P.MALAL.FDPALMKKSDPE.P.LLFSE |
Retrocopy | AGGLGAFAFFPVTVGFTLRAVFVYLADLLMPHLGAVQDPPTPPEMALALNFDPALMKKSDPERPMLLFSE |
|
Parental | SELSIRIGRAGLLSDKSENGEAYQRKKAAPTGLPEGLAPPVPSRGNPVQPGSSRWRRIVLLILAITVHNV |
| SELSIRI.R.GLLSDKSENGEAYQRKKA..TGLP.G.APP.PSRGNP.Q.GSS.WRRIVLLILAITVH.V |
Retrocopy | SELSIRIDRMGLLSDKSENGEAYQRKKASATGLPKGPAPPMPSRGNPAQHGSSSWRRIVLLILAITVHSV |
|
Parental | PEGLAVGVGFGAVE-RTASATFESARNLAIGIGIQNFPEGLAVSLPL-RGAGFSTWRAFWYGQLSGMVEP |
| PEGLAVGVGF.AVE.R..SATFE.ARNLAI.IGI.NFPEGLA.SLPL..GAGFSTWRAFWYGQLSGMVEP |
Retrocopy | PEGLAVGVGFRAVE>RRVSATFENARNLAIRIGIRNFPEGLADSLPL*GGAGFSTWRAFWYGQLSGMVEP |
|
Parental | LAGVFGAFAVVLAEPILPYALAFAAGAMVYVVMDDIIPEAQISGNGKLASWASILGFVVMMSLDVGLG |
| LAGVFGAFAVVLAE.ILP.ALAFAAG.MVYVV.DDIIP.AQISGNGKLASWASILGF.VMMSLD.GLG |
Retrocopy | LAGVFGAFAVVLAELILPCALAFAAGFMVYVVVDDIIPKAQISGNGKLASWASILGFAVMMSLDIGLG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_189 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.