RetrogeneDB ID: retro_tsyr_1925

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_67474:6417..6747(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TYROBP
• Ensembl ID: ENSTSYG00000000470
• Aliases: None
• Description: TYRO protein tyrosine kinase binding protein [Source:HGNC Symbol;Acc:12449]

Sequence

>retro_tsyr_1925
ATGGGGGGCCTTGAAGCCTCCAGCAAGTTCCTGCTCCTGCCGCTCCTTCTGACTGTGGGTGGTCTCAGTCCTGTCCAGGC
CCAGAGAGAGTGCAACTGCTCCATGGTGAGCCCTGGTGTGCTGGTGGGGATTGTGCTGGGTAACCTGGTGCTGACCCTGC
TCATCACCCTGGCTGTGTACTCTCTGGGTTGGCTGGTTCCCCAGGGGTGAGGGGCTGCAGAGGTGACATGGAAACAGTGT
ATTTCTGAGACTGAGTCTCCTTATCAGGAACTTCAGGGTCAGAGACCAGATGTCTACAGTGACCTCAACACACAGAGGCA
GTATTACAAA

Alignment

ORF - retro_tsyr_1925 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGGLEASSKFLLPLLLLTVGGLSPVQAQRECNCSTVSPGVLAGIVLGDLVLTLLIALAVYSLGRLVPQGR
          MGGLEASSKFLL..LLLTVGGLSPVQAQRECNCS.VSPGVL.GIVLG.LVLTLLI.LAVYSLG.LVPQG.
Retrocopy MGGLEASSKFLLLPLLLTVGGLSPVQAQRECNCSMVSPGVLVGIVLGNLVLTLLITLAVYSLGWLVPQG*

Parental  GAAEAVTRKQRIAETESPYQELQGQRPDVYSDLNTQRQYYK
          GAAE.VT.KQ.I.ETESPYQELQGQRPDVYSDLNTQRQYYK
Retrocopy GAAE-VTWKQCISETESPYQELQGQRPDVYSDLNTQRQYYK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1925 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000000470	1 retrocopy	retro_tsyr_1925 ,