RetrogeneDB ID: retro_tsyr_2091

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_8899:11333..11685(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SPA17
• Ensembl ID: ENSTSYG00000008379
• Aliases: None
• Description: sperm autoantigenic protein 17 [Source:HGNC Symbol;Acc:11210]

Sequence

>retro_tsyr_2091
GACAATATACCAGGTTTTTCTGCAGCATATTTTGAAAATCTTCTAGAGAAAAGAGAGAAAACCAACTTTGAACCAGCAGA
AGGGGGGCTAAGGTAGATGACTGCTTCTATTACCATGCATTCAAGGAGCAAGAATCACCTGAGAAATGTGAGCCCGAATA
AGAAAAGTCTCAGACATCTGTGGAAGAGGAAGAGACCCCAGTTACCATCTTAGAATCTTCTGAAGAAGATAAGGAAAAAG
AGAAAGTTCCTGCTTTCAAAATCCAAGCTGCCTTCCAGGACACATGGTCAAAGAGGTGGTAAAGAAAATTAAAATAGATA
ATCTTCAAAATGAAGAAACAGAGGAAAACATG

Alignment

ORF - retro_tsyr_2091 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.38 %
• Parental protein coverage: 79.19 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ENIPAFAAAYFENLLEKRDKTNFDPAEW-GAKVDDRFYNNHAFKEQGSPEKCEPEQGKSQT-VEGKETPV
          .NIP.F.AAYFENLLEKR.KTNF.PAE..GAKVDD.FY..HAFKEQ.SPEKCEPE..KSQT.VE..ETPV
Retrocopy DNIPGFSAAYFENLLEKREKTNFEPAEG<GAKVDDCFY-YHAFKEQESPEKCEPE*EKSQTSVEEEETPV

Parental  TTLESSEENKEKEEVAAVKIQAAFR-GHMAREEAKKMKADNLQNKETEKNM
          T.LESSEE.KEKE.V.A.KIQAAF..GHM..E..KK.K.DNLQN.ETE.NM
Retrocopy TILESSEEDKEKEKVPAFKIQAAFQ<GHMVKEVVKKIKIDNLQNEETEENM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_2091 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007961	1 retrocopy	retro_cjac_978,
Echinops telfairi	ENSETEG00000007789	1 retrocopy	retro_etel_911,
Homo sapiens	ENSG00000064199	1 retrocopy	retro_hsap_696,
Gorilla gorilla	ENSGGOG00000003757	1 retrocopy	retro_ggor_593,
Macaca mulatta	ENSMMUG00000008480	1 retrocopy	retro_mmul_2405,
Nomascus leucogenys	ENSNLEG00000007436	1 retrocopy	retro_nleu_2229,
Pongo abelii	ENSPPYG00000004017	1 retrocopy	retro_pabe_529,
Pan troglodytes	ENSPTRG00000004426	1 retrocopy	retro_ptro_500,
Tarsius syrichta	ENSTSYG00000008379	1 retrocopy	retro_tsyr_2091 ,