RetrogeneDB ID: | retro_tsyr_230 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | GeneScaffold_5919:94144..94946(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MTERFD2 | ||
| Ensembl ID: | ENSTSYG00000012283 | ||
| Aliases: | None | ||
| Description: | MTERF domain containing 2 [Source:HGNC Symbol;Acc:28785] |
Retrocopy-Parental alignment summary:
>retro_tsyr_230
GTCCTTGACTGGCACCCACTGATCCCCCTCACCTGGGCCTGTATGGCCAGGCAGATTTCTCTTGGAGAACAGAAAAGGAT
GACTGCTTCTTTGTTGTGTAAACTGACTACAGCTTCCAATAGAGGGAGCCTTGAGGAGTTATCCTATGCTGGATCCAATA
AATATGTGCAGGAACCAGAGTGCAGAATGAATCTTGTTCAATGCCTCCGTGAGAAGCAGAGACCCACTCCTATGGATCAA
GGAGCCTTGCGAGCTAGAAAATGTCATCAGTTCCCTCCTGGACATGGGTTTCAGTGATGTTCATATTAATGAATTGCTCA
GTGTACAACCAGGTACTAACCCTCAACAGATGCTGGACATCATTTCAGAATTTATACTCTTGGGTCTGAATCCAGAGTTT
GTGTATGTGGCCTTGAAGAAAAGTTCCCAGTTATTGAAACCATCTATAATGCAGATGAAGAAGCGTTCCAGTTATCTGTG
AAAGTTTGGGCTTGGAGACGGGAAACTAAAGAGGATGCTTCAGTGCTGCCCTGAAATTTTCACTATGCATCAACAGGACA
TTGAGGACATTGTCAGGGTCCTCAAGGAGAAGTGCCTTTTCACAGTACAGCATGTCACCGAGATTTTGCACAGATGCCCC
TCTGTTCTTCAGGAGAATCCAGGTGAACTGGACAAATTCCAGTATGCATATTTTAAGATGGGAATTAAGCATGCAGACAT
GGTAAGGAGTGAGTCCTTGAAGTACTCATTAACGAAGATTAATCAGAGACATATTTACCTGGAGCGCCTAGGACGGTACC
AA
ORF - retro_tsyr_230 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 87.04 % |
| Parental protein coverage: | 78.65 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | VLDWHRLISLTWACMARQTTSLGEQKRMTASLLRKLTTASNRGSLEELSYVGSNKYVQEPECRMNLVQCL |
| VLDWH.LI.LTWACMARQ..SLGEQKRMTASLL.KLTTASNRGSLEELSY.GSNKYVQEPECRMNLVQCL | |
| Retrocopy | VLDWHPLIPLTWACMARQI-SLGEQKRMTASLLCKLTTASNRGSLEELSYAGSNKYVQEPECRMNLVQCL |
| Parental | REKQRSTPMDQEAL-ELENIISSLLDMGFSDAHINELLSVQPGANLQQMVDIISEFILLGLNPEPVYVAL |
| REKQR.TPMDQ.AL.ELEN.ISSLLDMGFSD.HINELLSVQPG.N.QQM.DIISEFILLGLNPE.VYVAL | |
| Retrocopy | REKQRPTPMDQGAL>ELENVISSLLDMGFSDVHINELLSVQPGTNPQQMLDIISEFILLGLNPEFVYVAL |
| Parental | KKNPQLLKMSVMQMKKRSRYLRKLGLEEGKLKRVLQCCPEIFTMHQQNIEDIVRVLKEKCLFTVQQVTEI |
| KK..QLLK.S.MQMKKRS.YL.K.GL..GKLKR.LQCCPEIFTMHQQ.IEDIVRVLKEKCLFTVQ.VTEI | |
| Retrocopy | KKSSQLLKPSIMQMKKRSSYL*KFGLGDGKLKRMLQCCPEIFTMHQQDIEDIVRVLKEKCLFTVQHVTEI |
| Parental | LHRCPSVLHENPDELEYKFQYAYFRMGIKHPDMVRSEFLKYSLTKINQRHIYLERLGRYK |
| LHRCPSVL.ENP.EL..KFQYAYF.MGIKH.DMVRSE.LKYSLTKINQRHIYLERLGRY. | |
| Retrocopy | LHRCPSVLQENPGELD-KFQYAYFKMGIKHADMVRSESLKYSLTKINQRHIYLERLGRYQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_230 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000012283 | 3 retrocopies |
retro_tsyr_1286, retro_tsyr_1531, retro_tsyr_230 ,
|